Contig 012334:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029L18Sequence507006597 (2)ref|XP_009798427.1|1e-40PREDICTED: mitochondrial carrier protein MTM1-like isoform X1 [Nicotiana sylves669012334 (2)ref|XP_009798428.1|2e-69PREDICTED: mitochondrial carrier protein MTM1-like isoform X2 [Nicotiana sylves
JMSF033L03Sequence705006597 (2)ref|XP_009798427.1|5e-71PREDICTED: mitochondrial carrier protein MTM1-like isoform X1 [Nicotiana sylves739012334 (2)ref|XP_009798428.1|8e-110PREDICTED: mitochondrial carrier protein MTM1-like isoform X2 [Nicotiana sylves

Alignment

This contig is upended


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rJMSF033L03+                                               CAAGGTCAGTAGCCTGCATCACT
                      ____________________________________________________________
consensus                                                  CAAGGTCAGTAGCCTGCATCACT
 
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rJMSF033L03+          TGTTACCCAGTTGAGCTTGCCCGAACACGTATGCAGGCTTTCAGAGATGTCCCTAATGGT
                      ____________________________________________________________
consensus             TGTTACCCAGTTGAGCTTGCCCGAACACGTATGCAGGCTTTCAGAGATGTCCCTAATGGT
 
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rJMSF033L03+          GTGAAGCCTCCAGGAGTGTTGAAGACATTGGTTGGGATCATTTCGCCTGTCAGAAGTGCA
                      ____________________________________________________________
consensus             GTGAAGCCTCCAGGAGTGTTGAAGACATTGGTTGGGATCATTTCGCCTGTCAGAAGTGCA
 
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rJMSF033L03+          AATGGCCATCAACATTCAATTCAAGTGTACCGCACTCTGTGGACTGGGCTAGGAGCACAA
rJMFF029L18+                                                             GGAGCACAA
                      ____________________________________________________________
consensus             AATGGCCATCAACATTCAATTCAAGTGTACCGCACTCTGTGGACTGGGCTAGGAGCACAA
 
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rJMSF033L03+          CTTGCCCGTGATGTCCCTTTCTCTGCAATTTGCTGGGGAACTCTCGAGCCAGTTAGGAGA
rJMFF029L18+          CTTGCCCGTGATGTCCCTTTCTCTGCAATTTGCTGGGGAACTCTCGAGCCAGTTAGGAGA
                      ____________________________________________________________
consensus             CTTGCCCGTGATGTCCCTTTCTCTGCAATTTGCTGGGGAACTCTCGAGCCAGTTAGGAGA
 
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rJMSF033L03+          AAAGTGTTGGGTCTTACGAGCAGTGAAGCAAGTGCAGGCAGTATCCTGGGCGCAAACTTC
rJMFF029L18+          AAAGTGTTGGGTCTTACGAGCAATGAAGCAAGTGCAGGCAGTATCCTGGGCGCAAACTTC
                      ____________________________________________________________
consensus             AAAGTGTTGGGTCTTACGAGCAGTGAAGCAAGTGCAGGCAGTATCCTGGGCGCAAACTTC
 
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rJMSF033L03+          TGTGGTGGATTCATTGCAGGGAGCCTTGCTGCTGCTGTTACATGCCCTTTAGACGTGGCA
rJMFF029L18+          TGTGGTGGATTCATTGCAGGGAGCCTTGCTGCTGCTGTTACATGCCCTTTAGACGTGGCA
                      ____________________________________________________________
consensus             TGTGGTGGATTCATTGCAGGGAGCCTTGCTGCTGCTGTTACATGCCCTTTAGACGTGGCA
 
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rJMSF033L03+          AGGACCCGGAGGCAAATAGAGAACGATCCTGAGCGAGCACTGAAGATGACAACCAGAAGA
rJMFF029L18+          AGGACCCGGAGGCAAATAGAGAACGATCCTGAGCGAGCACTGAAGATGACAACCAGAAGA
                      ____________________________________________________________
consensus             AGGACCCGGAGGCAAATAGAGAACGATCCTGAGCGAGCACTGAAGATGACAACCAGAAGA
 
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rJMSF033L03+          ACATTGATCGAGATCTGGAGGGATGGAGGTATGAAAGGATTGTTCACTGGAGTCGGGCCA
rJMFF029L18+          ACATTGATCGAGATCTGGAGGGATGGAGGTATGAAAGGATTGTTCACTGGAGTCGGGCCA
                      ____________________________________________________________
consensus             ACATTGATCGAGATCTGGAGGGATGGAGGTATGAAAGGATTGTTCACTGGAGTCGGGCCA
 
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rJMSF033L03+          AGAGTTGCTCGAGCTGGTCCTTCAGTTGGAATCGTAGTTTCCTTCTATGAGGTAGTGAAA
rJMFF029L18+          AGAGTTGCTCGAGCTGGTCCTTCAGTTGGAATCGTAGTTTCCTTCTATGAGGTAGTGAAA
                      ____________________________________________________________
consensus             AGAGTTGCTCGAGCTGGTCCTTCAGTTGGAATCGTAGTTTCCTTCTATGAGGTAGTGAAA
 
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rJMSF033L03+          TATACATTGCACAACAGATAATATACACTGACAACGTAACTCGTTTGGGATATGGATATA
rJMFF029L18+          TATACATTGCACAACAGATAATATACACTGACAACGTAACTCGTTTGGGATATGGATATA
                      ____________________________________________________________
consensus             TATACATTGCACAACAGATAATATACACTGACAACGTAACTCGTTTGGGATATGGATATA
 
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rJMSF033L03+          GCTAGCTTACATTACAGTCTGGTTGAACAACATACAGAAACAGCTAATCAAGAAAGCCAA
rJMFF029L18+          GCTAGCTTACATTACAGTCTGGTTGAACAACATACAGAAACAGCTAATCAAGAAAGCCAA
                      ____________________________________________________________
consensus             GCTAGCTTACATTACAGTCTGGTTGAACAACATACAGAAACAGCTAATCAAGAAAGCCAA
 
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rJMSF033L03+          ATTAGGCAAAACAAGCAATTTGTATTTGGATGCCGCCCACTCTCTCTTGTACCCAT    
rJMFF029L18+          ATTAGGCAAAACAAGCAATTTGTATTTGGATGCCGCCCACTCTCTCTTGTACCCATTCTT
                      ____________________________________________________________
consensus             ATTAGGCAAAACAAGCAATTTGTATTTGGATGCCGCCCACTCTCTCTTGTACCCATTCTT
 
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rJMFF029L18+          TTCTTTTCAATACAAAATAGCAATATATATATATCATTAGGATAAGAACTAAGAAGAATG
                      ____________________________________________________________
consensus             TTCTTTTCAATACAAAATAGCAATATATATATATCATTAGGATAAGAACTAAGAAGAATG
 
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rJMFF029L18+          TGTTTTTCATGTATACACGACTCAAGGCCGGCCTGTTGGGGCAAGAATGAGAAATAAGCA
                      ____________________________________________________________
consensus             TGTTTTTCATGTATACACGACTCAAGGCCGGCCTGTTGGGGCAAGAATGAGAAATAAGCA