Contig 012333:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018C02Sequence586012333 (4)ref|XP_004246698.1|9e-84PREDICTED: nuclear transcription factor Y subunit B-10 isoform X1 [Solanum lyco744012333 (4)ref|XP_009620316.1|2e-97PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3 [Nicotia
JMFF029J19Sequence753012333 (4)ref|XP_009620316.1|1e-97PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3 [Nicotia
JMFN039G01Sequence611012333 (4)ref|XP_009620316.1|2e-99PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3 [Nicotia

Alignment

This contig is upended


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JMFF018C02-                                                     ATCTCAGTCGTCTCCTCT
                      ____________________________________________________________
consensus                                                       ATCTCAGTCGTCTCCTCT
 
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JMFF018C02-           CTCCCCTCTTCTCCAGCGTCCGATCTCCCCTCCCCTCTTCTCTCCTTCACCCCCGCCCAA
JMFN039G01-                             TCCGATCTCCCCTCCCCTCTTCTCTCCTTCACCCCCGCCCAA
                      ____________________________________________________________
consensus             CTCCCCTCTTCTCCAGCGTCCGATCTCCCCTCCCCTCTTCTCTCCTTCACCCCCGCCCAA
 
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JMFF018C02-           ATACAAATACTCTGTTTCTCAGGGTTTTTCTGCTGCTGCTGCTGCTATGTCGGACGGTCA
JMFN039G01-           ATACAAATACTCTGTTTCTCAGGGTTTTTCTGCTGCTGCTGCTGCTATGTCGGACGGTCA
rJMFF018C02+           TACAAATACTCTGTTTCTCAGGGTTTTTCTGCTGCTGCTGCTGCTATGTCGGACGGTCA
rJMFF029J19+                                     TTCTGCTGCTGCTGCTGNTATGTCGGACGGTCA
                      ____________________________________________________________
consensus             ATACAAATACTCTGTTTCTCAGGGTTTTTCTGCTGCTGCTGCTGCTATGTCGGACGGTCA
 
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JMFF018C02-           GGCATCGTCGCAGCATCCGCAGAGTCCCGGTGGCGGCAGTCACGAGAGCGGGGAGCAGAG
JMFN039G01-           GGCATCGTCGCAGCATCCGCAGAGTCCCGGTGGCGGCAGTCACGAGAGCGGGGAGCAGAG
rJMFF018C02+          GGCATCGTCGCAGCATCCGCAGAGTCCCGGTGGCGGCAGTCACGAGAGCGGGGAGCAGAG
rJMFF029J19+          GGCATCGTCGCAGCATCCGCAGAGTCCCGGTGGCGGCAGTCACGAGAGCGGGGAGCAGAG
                      ____________________________________________________________
consensus             GGCATCGTCGCAGCATCCGCAGAGTCCCGGTGGCGGCAGTCACGAGAGCGGGGAGCAGAG
 
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JMFF018C02-           CCCTAGGTCGAATGTTAGGGAGCAGGATAGGTTTCTCCCCATCGCGAATATCAGTCGGAT
JMFN039G01-           CCCTAGGTCGAATGTTAGGGAGCAGGATAGGTTTCTCCCCATCGCGAATATCAGTCGGAT
rJMFF018C02+          CCNTAGGTCGAATGTTAGGGAGCAGGATAGGTTTCTCCCCATCGCGAATATCAGTCGGAT
rJMFF029J19+          CCNTAGGTCGAATGTTAGGGAGCAGGATAGGTTTCTCCCCATCGCGAATATCAGTCGGAT
                      ____________________________________________________________
consensus             CCCTAGGTCGAATGTTAGGGAGCAGGATAGGTTTCTCCCCATCGCGAATATCAGTCGGAT
 
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JMFF018C02-           CATGAAGAAGGCTCTCCCGCCCAACGGTAAAATTGCTAAGGATGCTAAGGAGACTGTTCA
JMFN039G01-           CATGAAGAAGGCTCTCCCGCCCAACGGTAAAATTGCTAAGGATGCTAAGGAGACTGTTCA
rJMFF018C02+          CATGAAGAAGGCTCTCCCGCCCAACGGTAAAATTGCTAAGGATGCTAAGGAGACTGTTCA
rJMFF029J19+          CATGAAGAAGGCTCTCCCGCCCAACGGTAAAATTGCTAAGGATGCTAAGGAGACTGTTCA
                      ____________________________________________________________
consensus             CATGAAGAAGGCTCTCCCGCCCAACGGTAAAATTGCTAAGGATGCTAAGGAGACTGTTCA
 
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JMFF018C02-           GGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCAAGTGACAAGTGCCAGAG
JMFN039G01-           GGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCAAGTGACAAGTGCCAGAG
rJMFF018C02+          GGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCAAGTGACAAGTGCCAGAG
rJMFF029J19+          GGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCAAGTGACAAGTGCCAGAG
                      ____________________________________________________________
consensus             GGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCAAGTGACAAGTGCCAGAG
 
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JMFF018C02-           AGAAAAAAGGAAGACAATTAATGGAGATGATCTGCTATGGGCAATGGCTACTTTAGGGTT
JMFN039G01-           AGAAAAAAGGAAGACAATTAATGGAGATGATCTGCTATGGGCAATGGCTACTTTAGGGTT
rJMFF018C02+          AGAAAAAAGGAAGACAATTAATGGAGATGATCTGCTATGGGCAATGGCTACTTTAGGGTT
rJMFF029J19+          AGAAAAAAGGAAGACAATTAATGGAGATGATCTGCTATGGGCAATGGCTACTTTAGGGTT
                      ____________________________________________________________
consensus             AGAAAAAAGGAAGACAATTAATGGAGATGATCTGCTATGGGCAATGGCTACTTTAGGGTT
 
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JMFF018C02-           TGAAGATTATCTTGACCCCCTGAAGGTGTACCTCACCCGTTACAGGGAGATGGAGGGTGA
JMFN039G01-           TGAAGATTATCTTGACCCCCTGAAGGTGTACCTCACCCGTTACAGGGAGATGGAGGGTGA
rJMFF018C02+          TGAAGATTATCTTGACCCCCTGAAGGTGTACCTCACCCGTTACAGGGAGATGGAGGGTGA
rJMFF029J19+          TGAAGATTATCTTGACCCCCTGAAGGTGTACCTCACCCGTTACAGGGAGATGGAGGGTGA
                      ____________________________________________________________
consensus             TGAAGATTATCTTGACCCCCTGAAGGTGTACCTCACCCGTTACAGGGAGATGGAGGGTGA
 
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JMFF018C02-           TACAAAGGGGTCGGCAAAGGCCGCTGATGGTCCAGGTAAAAGAGATGGGATGCATCCTAA
JMFN039G01-           TACAAAGGGGTCGGCAAAGGCCGCTGATGGTCCAGGTAAAAGAGATGGGATGCATCCTAA
rJMFF018C02+          TACAAAGGGGTCGGCAAAGGCCGCTGATGGTCCAGGTAAAAGAGATGGGATGCATCCTAA
rJMFF029J19+          TACAAAGGGGTCGGCAAAGGCCGCTGATGGTCCAGGTAAAAGAGATGGGATGCATCCTAA
                      ____________________________________________________________
consensus             TACAAAGGGGTCGGCAAAGGCCGCTGATGGTCCAGGTAAAAGAGATGGGATGCATCCTAA
 
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JMFF018C02-           TCCTAATATGCAGCTTGCACATCAAGGC                                
JMFN039G01-           TCCTAATATGCAGCTTGCACATCAAGGCTCATTCACTCAAGGAATGAGTTATGGAAACTC
rJMFF018C02+          TCCTAATATGCAGCTTGCACATCAAGGCTCATTCACTCAAGGAATGAGTTATGGAAACTC
rJMFF029J19+          TCCTAATATGCAGCTTGCACATCAAGGCTCATTCACTCAAGGAATGAGTTATGGAAACTC
                      ____________________________________________________________
consensus             TCCTAATATGCAGCTTGCACATCAAGGCTCATTCACTCAAGGAATGAGTTATGGAAACTC
 
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JMFN039G01-           ACAGGGTCAGCATATGATGGTTCCAATGC                               
rJMFF018C02+          ACAGGGTCAGCATATGATGGTTCCAATGCAAGGCAGAGAGTAGAAGTCGATCTTCTTCAG
rJMFF029J19+          ACAGGGTCAGCATATGATGGTTCCAATGCAAGGCAGAGAGTAGAAGTCGATCTTCTTCAG
                      ____________________________________________________________
consensus             ACAGGGTCAGCATATGATGGTTCCAATGCAAGGCAGAGAGTAGAAGTCGATCTTCTTCAG
 
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rJMFF018C02+          GGGATCAATGGCGCACTGTTTGCCCGGAACATGATTGGACTCTGAACTGAGTCTGTAATC
rJMFF029J19+          GGGATCAATGGCGCACTGTTTGCCCGGAACATGATTGGACTCTGAACTGAGTCTGTAATC
                      ____________________________________________________________
consensus             GGGATCAATGGCGCACTGTTTGCCCGGAACATGATTGGACTCTGAACTGAGTCTGTAATC
 
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rJMFF018C02+          TATAAATATATATAAGAATCCTTGTGCTTTAAACTCTGTAACATGATTGATTGATTTTTG
rJMFF029J19+          TATAAATATATATAAGAATCCTTGTGCTTTAAACTCTGTAACATGATTGATTGATTTTTG
                      ____________________________________________________________
consensus             TATAAATATATATAAGAATCCTTGTGCTTTAAACTCTGTAACATGATTGATTGATTTTTG
 
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rJMFF018C02+          TTGTCTCTGGGTGTCACAGCTCCGT                                   
rJMFF029J19+          TTGTCTCTGGGTGTCACAGCTCCGTGATATTTTAAATATTTATATTGGGTGGAAGAAGAA
                      ____________________________________________________________
consensus             TTGTCTCTGGGTGTCACAGCTCCGTGATATTTTAAATATTTATATTGGGTGGAAGAAGAA