Contig 012330:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           TGTGTACCGCTGTCCCCGTTTTCCTAGAGAGAGAAGTTCXXXXXXXXXXXXXXXXXXXXX
rJMFF030H20+                                                   AGAGAGAGAGAGAGAGAGA
rJMFF029E14+                                                  GAGAGAGAGAGAGAGAGAGA
                      ____________________________________________________________
consensus             TGTGTACCGCTGTCCCCGTTTTCCTAGAGAGAGAAGTTCNGAGAGAGAGAGAGAGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           XXXXXXXXXXXXXXXCTTTTGGTCATCCCTAAAGCTATGGCGTTCTTGTCATTCCTGGGC
rJMFF030H20+          GAGAGAGAGAGAGAGCTTTTGGTCATCCCTAAAGCTATGGCGTTCTTGTCATTCCTGGGC
rJMFF029E14+          GAGAGAGAGAGAGAGCTTTTGGTCATCCCTAAAGCTATGGCGTTCTTGTCATTCCTGGGC
                      ____________________________________________________________
consensus             GAGAGAGAGAGAGAGCTTTTGGTCATCCCTAAAGCTATGGCGTTCTTGTCATTCCTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           AGGCTTCTCTTTGTCTCCGTCTTCATTCTCTCGGCTTATCAAGAGTTTAATGAATTCGGG
rJMFF030H20+          AGGCTTCTCTTTGTCTCCGTCTTCATTCTCTCGGCTTATCAAGAGTTTAATGAATTCGGG
rJMFF029E14+          AGGCTTCTCTTTGTCTCCGTCTTCATTCTCTCGGCTTATCAAGAGTTTAATGAATTCGGG
                      ____________________________________________________________
consensus             AGGCTTCTCTTTGTCTCCGTCTTCATTCTCTCGGCTTATCAAGAGTTTAATGAATTCGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           ACTGATGGCGGGCCAGCAGCGAAGACATTGAGGCCCAAGTTCAATGCTTTCACTAAGCAT
rJMFF030H20+          ACTGATGGCGGGCCAGCAGCGAAGACATTGAGGCCCAAGTTCAATGCTTTCACTAAGCAT
rJMFF029E14+          ACTGATGGCGGGCCAGCAGCGAAGACATTGAGGCCCAAGTTCAATGCTTTCACTAAGCAT
                      ____________________________________________________________
consensus             ACTGATGGCGGGCCAGCAGCGAAGACATTGAGGCCCAAGTTCAATGCTTTCACTAAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           ATCACAGCACAAACTGGATTCCAAGTTCCCCACGTAGAGATGAAACATCTCGCTCTGGGC
rJMFF030H20+          ATCACAGCACAAACTGGATTCCAAGTTCCCCACGTAGAGATGAAACATCTCGCTCTGGGC
rJMFF029E14+          ATCACAGCACAAACTGGATTCCAAGTTCCCCACGTAGAGATGAAACATCTCGCTCTGGGC
                      ____________________________________________________________
consensus             ATCACAGCACAAACTGGATTCCAAGTTCCCCACGTAGAGATGAAACATCTCGCTCTGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           TTTATCGTTATGAAGGGGCTTGGAAGTCTTCTGTTCGTCTTTGGCAGCTCTCTCGGAGCT
rJMFF030H20+          TTTATCGTTATGAAGGGGCTTGGAAGTCTTCTGTTCGTCTTTGGCAGCTCTCTCGGAGCT
rJMFF029E14+          TTTATCGTTATGAAGGGGCTTGGAAGTCTTCTGTTCGTCTTTGGCAGCTCTCTCGGAGCT
                      ____________________________________________________________
consensus             TTTATCGTTATGAAGGGGCTTGGAAGTCTTCTGTTCGTCTTTGGCAGCTCTCTCGGAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           TATATCCTGCTCTTGCACCAGGCAATTGTTACCCCGATCCTATATGACTTCTACAACTAC
rJMFF030H20+          TATATCCTGCTCTTGCACCAGGCAATTGTTACCCCGATCCTATATGACTTCTACAACTAC
rJMFF029E14+          TATATCCTGCTCTTGCACCAGGCAATTGTTACCCCGATCCTATATGACTTCTACAACTAC
                      ____________________________________________________________
consensus             TATATCCTGCTCTTGCACCAGGCAATTGTTACCCCGATCCTATATGACTTCTACAACTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           GAAGCTGACAAGAAAGAATTCGCTCAGCTTTTCATCAAGTTCTCACAGGGTCTGCAGCTG
rJMFF030H20+          GAAGCTGACAAGAAAGAATTCGCTCAGCTTTTCATCAAGTTCTCACAGGGTCTGCAGCTG
rJMFF029E14+          GAAGCTGACAAGAAAGAATTCGCTCAGCTTTTCATCAAGTTCTCACAGGGTCTGCAGCTG
                      ____________________________________________________________
consensus             GAAGCTGACAAGAAAGAATTCGCTCAGCTTTTCATCAAGTTCTCACAGGGTCTGCAGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN039N05-           CTGGGAGGGCTGCTGTTTTTCATTGGCATGAAGAACTCCATGCCCAG             
rJMFF030H20+          CTGGGAGGGCTGCTGTTTTTCATTGGCATGAAGAACTCCATGCCCAGGAGAACAGCAAAG
rJMFF029E14+          CTGGGAGGGCTGCTGTTTTTCATTGGCATGAAGAACTCCATGCCCAGGAGAACAGCAAAG
                      ____________________________________________________________
consensus             CTGGGAGGGCTGCTGTTTTTCATTGGCATGAAGAACTCCATGCCCAGGAGAACAGCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030H20+          AAGAAGGCTTCAAAGGCAAAAATGAACTGAGAGAGGGAAAGAAGAAGAGGGACATAGTTT
rJMFF029E14+          AAGAAGGCTTCAAAGGCAAAAATGAACTGAGAGAGGGAAAGAAGAAGAGGGACATAGTTT
                      ____________________________________________________________
consensus             AAGAAGGCTTCAAAGGCAAAAATGAACTGAGAGAGGGAAAGAAGAAGAGGGACATAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030H20+          CAGTTTTTTTGATGTGCACTAATTTAAACAAAATTTTCCTGTTGTCACGGGAGACCATAT
rJMFF029E14+          CAGTTTTTTTGATGTGCACTAATTTAAACAAAATTTTCCTGTTGTCACGGGAGACCATAT
                      ____________________________________________________________
consensus             CAGTTTTTTTGATGTGCACTAATTTAAACAAAATTTTCCTGTTGTCACGGGAGACCATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF030H20+          ATCTTTGTAAGCTTTGTATTTTTGGTACT                               
rJMFF029E14+          ATCTTTGTAAGCTTTGTATTTTTGGTACTTTGGGAACTTTTAGGGTGTGATTTACAACTT
                      ____________________________________________________________
consensus             ATCTTTGTAAGCTTTGTATTTTTGGTACTTTGGGAACTTTTAGGGTGTGATTTACAACTT