Contig 012328:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028P05Sequence490006212 (4)ref|XP_006600918.1|2e-11PREDICTED: BTB/POZ domain-containing protein NPY2 isoform X1 [Glycine max]620012328 (3)ref|XP_009629742.1|1e-29PREDICTED: BTB/POZ domain-containing protein NPY3-like isoform X1 [Nicotiana to
JMSF003C09Sequence298004765 (3)445012328 (3)ref|XP_009629742.1|4e-12PREDICTED: BTB/POZ domain-containing protein NPY3-like isoform X1 [Nicotiana to
JMSF016J15Sequence774012328 (3)ref|XP_009629742.1|5e-69PREDICTED: BTB/POZ domain-containing protein NPY3-like isoform X1 [Nicotiana to

Alignment

This contig is upended


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rJMSF016J15+                                            CTGGGATCACTAAAAGTGAAAGGAAA
                      ____________________________________________________________
consensus                                               CTGGGATCACTAAAAGTGAAAGGAAA
 
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rJMSF016J15+          AAGATATGTCGGCTTATGGATTGTCGGAAGCTATCGGTGGAGGCCTGCATGCACGCTGTG
                      ____________________________________________________________
consensus             AAGATATGTCGGCTTATGGATTGTCGGAAGCTATCGGTGGAGGCCTGCATGCACGCTGTG
 
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rJMSF016J15+          CAAAACGAGCGGCTTCCACTGCGAGTGGTTGTACAGGTTCTGTTCTTCGAGCAAGTAAGA
                      ____________________________________________________________
consensus             CAAAACGAGCGGCTTCCACTGCGAGTGGTTGTACAGGTTCTGTTCTTCGAGCAAGTAAGA
 
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rJMSF016J15+          TCTGCAACGTCATCCGACGAGGGCAGCACTTCCACCCTCCCGGGATCAATCAGGGCGCTG
rJMFF028P05+                                                  CGGGATCAATCAGGGCGCTG
                      ____________________________________________________________
consensus             TCTGCAACGTCATCCGACGAGGGCAGCACTTCCACCCTCCCGGGATCAATCAGGGCGCTG
 
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rJMSF016J15+          CTACCGGGAGGATCCCACGGGAGCTCGCGGACCACTACAA-CCAACACCGAGGAGGATTG
rJMFF028P05+          CTACCGGGAGGATCCCACGGGAGCTCGCGGACCACTACAACCCAACACCGAGGAGGATTG
                      ____________________________________________________________
consensus             CTACCGGGAGGATCCCACGGGAGCTCGCGGACCACTACAACCCAACACCGAGGAGGATTG
 
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rJMSF016J15+          GGACGCTGTGCCCACAGCCGAGGAGCTCAAGGCTTTGAAAGGCGAGCTCGCTACTCTGAA
rJMFF028P05+          GGACGCTGTGCCCACAGCCGAGGAGCTCAAGGCTTTGAAAGGCGAGCTCGCTACTCTGAA
                      ____________________________________________________________
consensus             GGACGCTGTGCCCACAGCCGAGGAGCTCAAGGCTTTGAAAGGCGAGCTCGCTACTCTGAA
 
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rJMSF003C09+            TAAGGGATGGAGCAGGAAGCAACTACGACGGTCAGGCTAACGATGCGAAAACCAGCGC
rJMSF016J15+          GCTAAGGGATGGAGCAGGAAGCAACTACGACGGTCAGGCTAACGATGCGAAAACCAGCGC
rJMFF028P05+          GCTAAGGGATGGAGCAGGAAGCAACTACGACGGTCAGGCTAACGATGCGAAAACCAGCGC
                      ____________________________________________________________
consensus             GCTAAGGGATGGAGCAGGAAGCAACTACGACGGTCAGGCTAACGATGCGAAAACCAGCGC
 
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rJMSF003C09+          CGAAAAGACGGCCACGAACAAAGTAAAGAACTTAATCGTGTGGAAGAAGATCTTCTCGAA
rJMSF016J15+          CGAAAAGACGGCCACGAACAAAGTAAAGAACTTAATCGTGTGGAAGAAGATCTTCTCGAA
rJMFF028P05+          CGAAAAGACGGCCACGAACAAAGTAAAGAACTTAATCGTGTGGAAGAAGATCTTCTCGAA
                      ____________________________________________________________
consensus             CGAAAAGACGGCCACGAACAAAGTAAAGAACTTAATCGTGTGGAAGAAGATCTTCTCGAA
 
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rJMSF003C09+          GCTGTGGTCCAACAAAGATAGGCACAGTGAAAACAGCAGTTCAGATACCTCAGACAGCCC
rJMSF016J15+          GCTGTGGTCCAACAAAGATAGGCACAGTGAAAACAGCAGTTCAGATACCTCAGACAGCCC
rJMFF028P05+          GCTGTGGTCCAACAAAGATAGGCACAGTGAAAACAGCAGTTCAGATACCTCAGACAGCCC
                      ____________________________________________________________
consensus             GCTGTGGTCCAACAAAGATAGGCACAGTGAAAACAGCAGTTCAGATACCTCAGACAGCCC
 
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rJMSF003C09+          TGCATCAACCACCGGGGACGAGACGAAGTCCACTCCGTCGAGAAGTAGGAGACACTCCTT
rJMSF016J15+          TGCATCAACCACCGGGGACGAGACGAAGTCCACTCCGTCGAGAAGTAGGAGACACTCCTT
rJMFF028P05+          TGCATCAACCACCGGGGACGAGACGAAGTCCACTCCGTCGAGAAGTAGGAGACACTCCTT
                      ____________________________________________________________
consensus             TGCATCAACCACCGGGGACGAGACGAAGTCCACTCCGTCGAGAAGTAGGAGACACTCCTT
 
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rJMSF003C09+          GTCTTAGGCTGGGGATTCTATCGACATATGTAAAAGGTATTGTTCCAGTTACATTAGGAC
rJMSF016J15+          GTCTTAGGCTGGGGATTCTATCGACATATGTAAAAGGTATTGTTCCAGTTACATTAGGAC
rJMFF028P05+          GTCTTAGGCTGGGGATTCTATCGACATATGTAAAAGGTATTGTTCCAGTTACATTAGGAC
                      ____________________________________________________________
consensus             GTCTTAGGCTGGGGATTCTATCGACATATGTAAAAGGTATTGTTCCAGTTACATTAGGAC
 
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rJMSF003C09+          TAGAATCAAATGATGTCTGCGAGCTAACAACTGTGAATGTAAGCAGTTAGTAGTTAAGTT
rJMSF016J15+          TAGAATCAAATGATGTCTGCGAGCTAACAACTGTGAATGTAAGCAGTTAGTAGTTAAGTT
rJMFF028P05+          TAGAATCAAATGATGTCTGCGAGCTAACAACTGTGAATGTAAGCAGTTAGTAGTTAAGTT
                      ____________________________________________________________
consensus             TAGAATCAAATGATGTCTGCGAGCTAACAACTGTGAATGTAAGCAGTTAGTAGTTAAGTT
 
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rJMSF003C09+          TCCCTATGTAATTCTTTAGCAGCATTAGTTTGTGTTTGTTTTCACAATGTAGAGCACAGC
rJMSF016J15+          TCCCTATGTAATTCTTTAGCAGCATTAGTTTGTGTTTGTTTTCACAATGTAGAGCACAGC
rJMFF028P05+          TCCCTATGTAATTCTTTAGCAGCATTAGTTTGTGTTTGTTTTCACAATGTAGAGCACAGC
                      ____________________________________________________________
consensus             TCCCTATGTAATTCTTTAGCAGCATTAGTTTGTGTTTGTTTTCACAATGTAGAGCACAGC
 
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rJMSF003C09+          TCAGAACAGACATTTTCTGTCTAAGGT                                 
rJMSF016J15+          TCAGAACAGACATTTTCTGTCTAAGGT                                 
rJMFF028P05+          TCAGAACAGACATTTTCTGTCTAAGGTTTTGCATTGTATTTTGTTGTCCCTGCAAGAAAA
                      ____________________________________________________________
consensus             TCAGAACAGACATTTTCTGTCTAAGGTTTTGCATTGTATTTTGTTGTCCCTGCAAGAAAA