Contig 012325:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027N04Sequence546012325 (7)ref|XP_009611879.1|2e-19PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]739012325 (7)ref|XP_009611879.1|4e-62PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]
JMSF044K22Sequence804012325 (7)ref|XP_009611879.1|1e-65PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]755012325 (7)ref|XP_009611879.1|7e-62PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]
JMSF045K22Sequence735012325 (7)ref|XP_009611879.1|1e-67PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]
JMSF049M06Sequence606012325 (7)ref|XP_009611879.1|2e-31PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]767012325 (7)ref|XP_009611879.1|2e-61PREDICTED: transcription factor bHLH148-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF027N04-                                      GATTCCCTTTCAAATCCCGCACATCTAAACCAT
JMSF044K22-                                     GGATTCCCTTTCAAATCCCGCACATCTAAACCAT
                      ____________________________________________________________
consensus                                       GGATTCCCTTTCAAATCCCGCACATCTAAACCAT
 
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JMSF049M06-                     CTTCAGAGGAGAGGCTTCTGGAAATTGTTCCTTCCTTTTTACGATCATCT
JMFF027N04-           CAGAGAATCACTTCAGAGGAGAGGCTTCTGGAAATTATTCCTTCCTTTTTACGATCATCT
JMSF044K22-           CAGAGAATCACTTCAGAGGAGAGGCTTCTGGAAATTGTTCCTTCCTTTTTACGATCATCT
                      ____________________________________________________________
consensus             CAGAGAATCACTTCAGAGGAGAGGCTTCTGGAAATTGTTCCTTCCTTTTTACGATCATCT
 
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JMSF049M06-           GTTCATCTATTCATATCCGCCGTGTGAACAGAGAGTGTTGAATCGCGAAATCCTGATCTG
JMFF027N04-           GTTCATCTATTCATATCCGCCGTGTGAACAGAGAGTGTTGAATCGCGAAATCCTGATCTG
JMSF044K22-           GTTCATCTATTCATATCCGCCGTGTGAACAGAGAGTGTTGAATCGCGAAATCCTGATCTG
                      ____________________________________________________________
consensus             GTTCATCTATTCATATCCGCCGTGTGAACAGAGAGTGTTGAATCGCGAAATCCTGATCTG
 
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JMSF049M06-           ATTAGTTCGGTTCGGAATTCGGTGTGCAGAGTCTGATCGAATCGGCGGTGTTGATGGCGT
JMFF027N04-           ATTAGTTCGGTTCGGAATTCGGTGTGCAGAGTCTGATCGAATCGGCGGTGTTGATGGCGT
JMSF044K22-           ATTAGTTCGGTTCGGAATTCGGTGTGCAGAGTCTGATCGAATCGGCGGTGTTGATGGCGT
rJMSF049M06+                                TGTGCAGAGTCTGATCGAATCGGCGGTGTTGATGGCGT
rJMFF027N04+                                                 AATCGNCGGTGTTGATGGCGT
                      ____________________________________________________________
consensus             ATTAGTTCGGTTCGGAATTCGGTGTGCAGAGTCTGATCGAATCGGCGGTGTTGATGGCGT
 
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JMSF049M06-           CGAGTATGGTGCCG-AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
JMFF027N04-           CGAGTATGGTGCCG-AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
JMSF044K22-           CGAGTATGGTGCCG-AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
rJMSF049M06+          CGAGTATGGTGCCGAAATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
rJMSF044K22+                         AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
rJMSF045K22+                                              AGTAGAGCGGCGGCNAGGAGGAGG
rJMFF027N04+          CGAGTATGGTGCCG-AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
                      ____________________________________________________________
consensus             CGAGTATGGTGCCG-AATACGGTTACGAACACGGGGAGTAGAGCGGCGGCGAGGAGGAGG
 
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JMSF049M06-           AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
JMFF027N04-           AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
JMSF044K22-           AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
rJMSF049M06+          AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
rJMSF044K22+          AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
rJMSF045K22+          AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTCAAAGATGCGAGCAATAGCAGCTC
rJMFF027N04+          AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
                      ____________________________________________________________
consensus             AAGAAGAAGAGAAGCCAGGTTCCGAGTGCGCAGAGTC-AAGATGCGAGCAATAGCAGCTC
 
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JMSF049M06-           GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
JMFF027N04-           GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
JMSF044K22-           GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
rJMSF049M06+          GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
rJMSF044K22+          GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
rJMSF045K22+          GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTNTTCGAGGCTTCTCGGAGC
rJMFF027N04+          GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
                      ____________________________________________________________
consensus             GGCTGATGAATGGAAATCCGAAGCTCAACAGCAGGTTTACTCTTCGAGGCTTCTCGGAGC
 
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JMSF049M06-           GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
JMFF027N04-           GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
JMSF044K22-           GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
rJMSF049M06+          GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
rJMSF044K22+          GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
rJMSF045K22+          NCTGCGAATGNTCCGGCTAAGTCCGCGTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
rJMFF027N04+          GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
                      ____________________________________________________________
consensus             GCTGCGAATGCTCCGGCTAAGTCCGCCTTCTTCGCCGGCGGCGCCGAAGGGCGGGAGAGC
 
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JMSF049M06-           GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
JMFF027N04-           GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCANGTGGAG
JMSF044K22-           GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
rJMSF049M06+          GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
rJMSF044K22+          GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
rJMSF045K22+          GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
rJMFF027N04+          GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
                      ____________________________________________________________
consensus             GGTGCGAGAAGTGGCGGACAGAGTTTTGGCGGTTACGGCGAAGGGGCGTACCAGGTGGAG
 
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JMSF049M06-           CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
JMFF027N04-           CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGT                         
JMSF044K22-           CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
rJMSF049M06+          CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
rJMSF044K22+          CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
rJMSF045K22+          CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
rJMFF027N04+          CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
                      ____________________________________________________________
consensus             CCGCGAGATCCTCACCAACCGCCTCAAGCTGAAGTTTATGAAGAAGCACAACAAGAGGCA
 
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JMSF049M06-           GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
JMSF044K22-           GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
rJMSF049M06+          GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
rJMSF044K22+          GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
rJMSF045K22+          GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
rJMFF027N04+          GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
                      ____________________________________________________________
consensus             GAGAGTGGTGGCGGCGGCGGCGGCGAGAGGGAACAGCCGGTTGCCGAAGAAGCCGAGATT
 
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JMSF049M06-           GAGTATTCTCCGGCTG                                            
JMSF044K22-           GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
rJMSF049M06+          GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
rJMSF044K22+          GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
rJMSF045K22+          GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
rJMFF027N04+          GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
                      ____________________________________________________________
consensus             GAGTATTCTCCGGCTGAAAATGAAGAATTTACCGACCGTACAGAGAAAGGCTCGCGTTTT
 
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JMSF044K22-           GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
rJMSF049M06+          GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
rJMSF044K22+          GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
rJMSF045K22+          GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
rJMFF027N04+          GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
                      ____________________________________________________________
consensus             GGGCCGGATTGTTCCCGGCTGCCGGAAGGAGCCGCTGCCTGTGATTCTAGAAGAAGCCAC
 
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JMSF044K22-           TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCC        
rJMSF049M06+          TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCCGATCTGCT
rJMSF044K22+          TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCCGATCTGCT
rJMSF045K22+          TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCCGATCTGCT
rJMFF027N04+          TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCCGATCTGCT
                      ____________________________________________________________
consensus             TGATTACATAGCCGCTCTGGAGATGCAAGTCCGAGCCATGAGCGCTCTAGCCGATCTGCT
 
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rJMSF049M06+          TTCCGG                                                      
rJMSF044K22+          TTCCGG                                                      
rJMSF045K22+          TTCCGG                                                      
rJMFF027N04+          TTCCGGCGCTTCTTCTTCTAGCTCAGCTCCTCCCACTTGATGACGCCATTCATTTTCCTA
                      ____________________________________________________________
consensus             TTCCGGCGCTTCTTCTTCTAGCTCAGCTCCTCCCACTTGATGACGCCATTCATTTTCCTA
 
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rJMFF027N04+          TTTTAATTTTAATTTTTCTTTTTCTTTTTCTTTTATCCCTTTTCGTGTCCTATGAATATT
                      ____________________________________________________________
consensus             TTTTAATTTTAATTTTTCTTTTTCTTTTTCTTTTATCCCTTTTCGTGTCCTATGAATATT