Contig 012324:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF027M09-                                                         GATTGGCGAGTGAA
JMFF027M05-                                                         GATTGGCGAGTGAA
                      ____________________________________________________________
consensus                                                           GATTGGCGAGTGAA
 
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JMFF027M09-           GAGTACTCGAAGAAATCGAATCTAACCTCCATTGATTTAATCTTCTCTCTTCTCAATTTC
JMFF027M05-           GAGTACTCGAAGAAATCGAATCTAACCTCCATTGATTTAATCTTCTCTCTTCTCAATTTC
                      ____________________________________________________________
consensus             GAGTACTCGAAGAAATCGAATCTAACCTCCATTGATTTAATCTTCTCTCTTCTCAATTTC
 
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JMFF027M09-           TCATCTCTTCCCAGGGTCAAGACAGAGAAAATATAATGGCCTCAGAGAGGGAAGACTTCA
JMFF027M05-           TCATCTCTTCCCAGGGTCAAGACAGAGAAAATATAATGGCCTCAGAGAGGGAAGACTTCA
                      ____________________________________________________________
consensus             TCATCTCTTCCCAGGGTCAAGACAGAGAAAATATAATGGCCTCAGAGAGGGAAGACTTCA
 
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JMFF027M09-           GCGTTTCGGGGCCATTGCATCTAGATGTTGTTAACTGGGATAATGCGGACCATAGGAGGT
JMFF027M05-           GCGTTTCGGGGCCATTGCATCTAGATGTTGTTAACTGGGATAATGCGGACCATAGGAGGT
                      ____________________________________________________________
consensus             GCGTTTCGGGGCCATTGCATCTAGATGTTGTTAACTGGGATAATGCGGACCATAGGAGGT
 
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JMFF027M09-           CTGTTGCTGCGTGTTTGGTCCAAGGTGTCTACATTTTAGAGAGAGATCGACAGGAAAAGC
JMFF027M05-           CTGTTGCTGCGTGTTTGGTCCAAGGTGTCTACATTTTAGAGAGAGATCGACAGGAAAAGC
                      ____________________________________________________________
consensus             CTGTTGCTGCGTGTTTGGTCCAAGGTGTCTACATTTTAGAGAGAGATCGACAGGAAAAGC
 
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JMFF027M09-           GGCAGGGAGATGAAGCTCTTGCTCCTCCATGGTGGGAATTCTTCAATTTCAAGTTATATC
JMFF027M05-           GGCAGGGAGATGAAGCTCTTGCTCCTCCATGGTGGGAATTCTTCAATTTCAAGTTATATC
                      ____________________________________________________________
consensus             GGCAGGGAGATGAAGCTCTTGCTCCTCCATGGTGGGAATTCTTCAATTTCAAGTTATATC
 
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JMFF027M09-           GTCAGCTTGTTGACGATGCTGATTCCTCTATCTTTGGTGCTGTTTATGAATACACACCTC
JMFF027M05-           GTCAGCTTGTTGACGATGCTGATTCCTCTATCTTTGGTGCTGTTTATGAATACACACCTC
                      ____________________________________________________________
consensus             GTCAGCTTGTTGACGATGCTGATTCCTCTATCTTTGGTGCTGTTTATGAATACACACCTC
 
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JMFF027M09-           CGGGGTGCAATAGCAATGAGCTAACAGTTAAATGCCCACGCTATGCCATTGCTTTCCGAG
JMFF027M05-           CGGGGTGCAATAGCAATGAGCTAACAGTTAAATGCCCACGCTATGCCATTGCTTTCCGAG
                      ____________________________________________________________
consensus             CGGGGTGCAATAGCAATGAGCTAACAGTTAAATGCCCACGCTATGCCATTGCTTTCCGAG
 
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JMFF027M09-           GGACCATTACAAAAGGAGATGCATTTTCACGAGATTTGGAGTTGGATATGCACATTATCA
JMFF027M05-           GGACCATTACAAAAGGAGATGCATTTTCACGAGATTTGGAGTTGGATATGCACATTATCA
                      ____________________________________________________________
consensus             GGACCATTACAAAAGGAGATGCATTTTCACGAGATTTGGAGTTGGATATGCACATTATCA
 
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JMFF027M09-           GAAATGAACTTCATTTCTCTTCTCGCTTTGAGACGGGCATTCAAGCTGT           
JMFF027M05-           GAAATGAACTTCATTTCTCTTCTCGCTTTGAGACGGGCATTCAAGCTGTGCGAAACGTGG
rJMFF027M09+                                    TTTGAGACGGGCATTCAAGCTGTGCGAAACGTGG
                      ____________________________________________________________
consensus             GAAATGAACTTCATTTCTCTTCTCGCTTTGAGACGGGCATTCAAGCTGTGCGAAACGTGG
 
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JMFF027M05-           TTGCGACATTTGGAA                                             
rJMFF027M09+          TTGCGACATTTGGAAGTTCAAATATCTGGTTAACTGGTCATTCCCTCGGGGCTGCTATGG
rJMFF027M05+          TTGCGACATTNGGAAGTTCAAATATCTGGTTAACTGGTCATTCCCTCGGGGCTGCTATGG
                      ____________________________________________________________
consensus             TTGCGACATTTGGAAGTTCAAATATCTGGTTAACTGGTCATTCCCTCGGGGCTGCTATGG
 
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rJMFF027M09+          CAATGCTCGCTGGTAAGACTATGGCAAAGACGGGAGTGTTTCTTGAAGCCTTTCTATTTA
rJMFF027M05+          CAATGCTCGCTGGTAAGACTATGGCAAAGACGGGAGTGTTTCTTGAAGCCTTTCTATTTA
                      ____________________________________________________________
consensus             CAATGCTCGCTGGTAAGACTATGGCAAAGACGGGAGTGTTTCTTGAAGCCTTTCTATTTA
 
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rJMFF027M09+          ACTCACCGTACTTTTCAGCTCCAGTTGAGAGAATCAAGGATAAGAAAGTCAAGCATGGCA
rJMFF027M05+          ACTCACCGTACTTTTCAGCTCCAGTTGAGAGAATCAAGGATAAGAAAGTCAAGCATGGCA
                      ____________________________________________________________
consensus             ACTCACCGTACTTTTCAGCTCCAGTTGAGAGAATCAAGGATAAGAAAGTCAAGCATGGCA
 
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rJMFF027M09+          TCCGAATCGCAACTAGTGTCATCACAGCTGGTCTTGCATTTGCTTCATCTGTGAAGAGTA
rJMFF027M05+          TCCGAATCGCAACTAGTGTCATCACAGCTGGTCTTGCATTTGCTTCATCTGTGAAGAGTA
                      ____________________________________________________________
consensus             TCCGAATCGCAACTAGTGTCATCACAGCTGGTCTTGCATTTGCTTCATCTGTGAAGAGTA
 
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rJMFF027M09+          ACAACCGGCAGAAGAATCTATCAAGAGATTCTTCTTTTGCTGCAATCTCGAGATGGGTGC
rJMFF027M05+          ACAACCGGCAGAAGAATCTATCAAGAGATTCTTCTTTTGCTGCAATCTCGAGATGGGTGC
                      ____________________________________________________________
consensus             ACAACCGGCAGAAGAATCTATCAAGAGATTCTTCTTTTGCTGCAATCTCGAGATGGGTGC
 
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rJMFF027M09+          CATGTCTGTTTGTGAATCCAGCTGATCACATATGCTCAGAGTACATTGGTTATTTTGAAC
rJMFF027M05+          CATGTCTGTTTGTGAATCCAGCTGATCACATATGCTCAGAGTACATTGGTTATTTTGAAC
                      ____________________________________________________________
consensus             CATGTCTGTTTGTGAATCCAGCTGATCACATATGCTCAGAGTACATTGGTTATTTTGAAC
 
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rJMFF027M09+          ATAGAAAAAAGATGGAGGATATCGGAATTGGGGCTATCGAGAAATTAGCAACCCAACACT
rJMFF027M05+          ATAGAAAAAAGATGGAGGATATCGGAATTGGGGCTATCGAGAAATTAGCAACCCAACACT
                      ____________________________________________________________
consensus             ATAGAAAAAAGATGGAGGATATCGGAATTGGGGCTATCGAGAAATTAGCAACCCAACACT
 
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rJMFF027M09+          CTATCGGGGGTCTTTTTATGAACGTTTTGGGAAAGGACACTGAAGAACCAATGCACCTTA
rJMFF027M05+          CTATCGGGGGTCTTTTTATGAACGTTTTGGGAAAGGACACTGAAGAACCAATGCACCTTA
                      ____________________________________________________________
consensus             CTATCGGGGGTCTTTTTATGAACGTTTTGGGAAAGGACACTGAAGAACCAATGCACCTTA
 
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rJMFF027M09+          TTCCATCAGCAGCTTTAACGGTCAACTTGACTCCTTCACCGGACTTCAAAGAAGCTCATG
rJMFF027M05+          TTCCATCAGCAGCTTTAACGGTCAACTTGACTCCTTCACCGGACTTCAAAGAAGCTCATG
                      ____________________________________________________________
consensus             TTCCATCAGCAGCTTTAACGGTCAACTTGACTCCTTCACCGGACTTCAAAGAAGCTCATG
 
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rJMFF027M09+          GAATTCACCAGTGGTGGAGACCTGCTCTCCGCTTGGATTCCAAAACCTACCTGTACAGTT
rJMFF027M05+          GAATTCACCAGTGGTGGAGACCTGCTCTCCGCTTGGATTCCAAAACCTACCTGTACAGTT
                      ____________________________________________________________
consensus             GAATTCACCAGTGGTGGAGACCTGCTCTCCGCTTGGATTCCAAAACCTACCTGTACAGTT
 
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rJMFF027M09+          AAGATCTCTCGTCTTGTTGATTTACTTTATGCTTCTTTATCACTCTCGATAAGCTCTTAT
rJMFF027M05+          AAGATCTCTCGTCTTGTTGATTTACTTTATGCTTCTTTATCACTCTCGATAAGCTCTTAT
                      ____________________________________________________________
consensus             AAGATCTCTCGTCTTGTTGATTTACTTTATGCTTCTTTATCACTCTCGATAAGCTCTTAT
 
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rJMFF027M09+          TGTGTGGCATCTTCTTGGCAGTACATAGATGAACCTGTGCTTTTAGTATTTA        
rJMFF027M05+          TGTGTGGCATCTTCTTGGCAGTACATAGATGAACCTGTGCTTTTAGTATTTATCTTCAAT
                      ____________________________________________________________
consensus             TGTGTGGCATCTTCTTGGCAGTACATAGATGAACCTGTGCTTTTAGTATTTATCTTCAAT