Contig 012319:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF029N11+                ATGCTATTGGTACAAAGCGTTTTGATAGTGAAGTTAGTGGGGATCGAGAGGTCC
rJMFF026C20+                                      TGATAGTGAAGTTAGTGGGGATCGAGAGGTCC
                      ____________________________________________________________
consensus                   ATGCTATTGGTACAAAGCGTTTTGATAGTGAAGTTAGTGGGGATCGAGAGGTCC
 
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rJMSF029N11+          AGCGAACTATGTTGGAGTTACTTAATCAGCTTGATGGCTTTAGCAGTGATGATAGAATAA
rJMFF026C20+          AGCGAACTATGTTGGAGTTACTTAATCAGCTTGATGGCTTTAGCAGTGATGATAGAATAA
                      ____________________________________________________________
consensus             AGCGAACTATGTTGGAGTTACTTAATCAGCTTGATGGCTTTAGCAGTGATGATAGAATAA
 
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rJMSF029N11+          AGGTCATTGCAGCAACAAATCGAGCTGATATTTTAGATCCTGCTTTGATGAGGTCTGGTC
rJMFF026C20+          AGGTCATTGCAGCAACAAATCGAGCTGATATTTTAGATCCTGCTTTGATGAGGTCTGGTC
                      ____________________________________________________________
consensus             AGGTCATTGCAGCAACAAATCGAGCTGATATTTTAGATCCTGCTTTGATGAGGTCTGGTC
 
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rJMSF029N11+          GTCTGGATCGTAAGATTGAGTTTCCTCATCCTACTGAAGAAGCCAGGGCTAGGATCTTGC
rJMFF026C20+          GTCTGGATCGTAAGATTGAGTTTCCTCATCCTACTGAAGAAGCCAGGGCTAGGATCTTGC
                      ____________________________________________________________
consensus             GTCTGGATCGTAAGATTGAGTTTCCTCATCCTACTGAAGAAGCCAGGGCTAGGATCTTGC
 
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rJMSF029N11+          AGATCCACTCCAGAAAGATGAATGTCAACCCAGATGTCAACTTTGAAGAGCTGGCTCGTT
rJMFF026C20+          AGATCCACTCCAGAAAGATGAATGTCAACCCAGATGTCAACTTTGAAGAGCTGGCTCGTT
                      ____________________________________________________________
consensus             AGATCCACTCCAGAAAGATGAATGTCAACCCAGATGTCAACTTTGAAGAGCTGGCTCGTT
 
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rJMSF029N11+          CAACAGATGATTTTAATGGGGCACAATTAAAAGCTGTTTGTGTTGAAGCAGGGATGTTGG
rJMFF026C20+          CAACAGATGATTTTAATGGGGCACAATTAAAAGCTGTTTGTGTTGAAGCAGGGATGTTGG
                      ____________________________________________________________
consensus             CAACAGATGATTTTAATGGGGCACAATTAAAAGCTGTTTGTGTTGAAGCAGGGATGTTGG
 
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rJMSF029N11+          CACTACGCCGTGATGCTACTGAGGTTATCCATGAAGACTTCAACGAAGGTATCATTCAAG
rJMSF006J22+                                                     CGAAGGTATCATTCAAG
rJMFF026C20+          CACTACGCCGTGATGCTACTGAGGTTATCCATGAAGACTTCAACGAAGGTATCATTCAAG
                      ____________________________________________________________
consensus             CACTACGCCGTGATGCTACTGAGGTTATCCATGAAGACTTCAACGAAGGTATCATTCAAG
 
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rJMSF029N11+          TACAGGCTAAAAAGAAAGCAAGCTTGAATTACTATGCTTAAAACCGCTTGAAGAGTTGGT
rJMSF006J22+          TACAGGCTAAAAAGAAAGCAAGCTTGAATTACTATGCTTAAAACCGCTTGAAGAGTTGGT
rJMFF026C20+          TACAGGCTAAAAAGAAAGCAAGCTTGAATTACTATGCTTAAAACCGCTTGAAGAGTTGGT
                      ____________________________________________________________
consensus             TACAGGCTAAAAAGAAAGCAAGCTTGAATTACTATGCTTAAAACCGCTTGAAGAGTTGGT
 
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rJMSF029N11+          GACAGGCTCGGTAGTCGGCTTCTACTTTCAGATGAAGAACCCAACGCCCCATGGCGTTTA
rJMSF006J22+          GACAGGCTCGGTAGTCGGCTTCTACTTTCAGNTGAAGAACCCAACGCCCCANGGCGNTTA
rJMFF026C20+          GACAGGCTCGGTAGTCGGCTTCTACTTTCAGATGAAGAACCCAACGCCCCATGGCGTTTA
                      ____________________________________________________________
consensus             GACAGGCTCGGTAGTCGGCTTCTACTTTCAGATGAAGAACCCAACGCCCCATGGCGTTTA
 
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rJMSF029N11+          GACTTCAAATCCTGATCTTCTTTTCTCTATGCCAGTGGAGAAAGAACTGGAAACTCGGAA
rJMSF006J22+          GACTTCAAATCCTGATCTTCTTTTCTCTATGCCAGTGGAGAAAGAACTGGAAACTCGGAA
rJMFF026C20+          GACTTCAAATCCTGATCTTCTTTTCTCTATGCCAGTGGAGAAAGAACTGGAAACTCGGAA
                      ____________________________________________________________
consensus             GACTTCAAATCCTGATCTTCTTTTCTCTATGCCAGTGGAGAAAGAACTGGAAACTCGGAA
 
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rJMSF029N11+          GGGAAGGGAATTGCAGGAATTCATTGACTATATATTTCTGTTTGTATTTTATCTTATAGT
rJMSF006J22+          GGGAAGGGAATTGCAGGAATTCATNGACTATATANTTCTGTTTGTATTTTATCNTATAGT
rJMFF026C20+          GGGAAGGGAATTGCAGGAATTCATTGACTATATATTTCTGTTTGTATTTTATCTTATAGT
                      ____________________________________________________________
consensus             GGGAAGGGAATTGCAGGAATTCATTGACTATATATTTCTGTTTGTATTTTATCTTATAGT
 
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rJMSF029N11+          TCTCTCTGCCAATTAACTTGAGAATATTCCTAAAAGTGAGGTGC                
rJMSF006J22+          TCTCTCTGCCAATTAACTTGAGAATATTCCTAAAAGTGAGGTGCAGTGAAGTGAAGTGTA
rJMFF026C20+          TCTCTCTGCCAATTAACTTGAGAATATTCCTAAAAGTGAGGTGCAGTGAAGTGAAGTGTA
                      ____________________________________________________________
consensus             TCTCTCTGCCAATTAACTTGAGAATATTCCTAAAAGTGAGGTGCAGTGAAGTGAAGTGTA
 
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rJMSF006J22+          CATTTT                                                      
rJMFF026C20+          CATTTTGTTATCATTTGTGGTATTAAATTTCTTTAATATCTGATAATCTCAGGAACAAGT
                      ____________________________________________________________
consensus             CATTTTGTTATCATTTGTGGTATTAAATTTCTTTAATATCTGATAATCTCAGGAACAAGT