Contig 012312:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF019F02-                             GGCTCTACCAGTGTACTCTGAATGGTAAGCACGAATTAGAAA
                      ____________________________________________________________
consensus                               GGCTCTACCAGTGTACTCTGAATGGTAAGCACGAATTAGAAA
 
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JMSF019F02-           TGTCAGCTGTGTTGGGAGCTTACTCCTCTGGATGTGGCTGTATAAATAGAGTTGCCGTTT
                      ____________________________________________________________
consensus             TGTCAGCTGTGTTGGGAGCTTACTCCTCTGGATGTGGCTGTATAAATAGAGTTGCCGTTT
 
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JMSF019F02-           TCAATCTCAGGCCCCGACTTAGCACTGCAACTTTCAACCCCTTTCTTGCTCGAAGATTTG
JMFF025K05-                                 CACTGCAACTTTCAATCCCTTTCTTGCTCGAAGATTTG
                      ____________________________________________________________
consensus             TCAATCTCAGGCCCCGACTTAGCACTGCAACTTTCAATCCCTTTCTTGCTCGAAGATTTG
 
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JMSF019F02-           GAGTGCGAGCTCTTTCTTCAATGTCGTACCACGCAGAACTCGACGCCGCCAAAAAGGCCG
JMFF025K05-           GAGTGCGAGCTCTTTCTTCAATGTCGTACCACGCAGAACTCGACGCCGCCAAAAAGGCCG
                      ____________________________________________________________
consensus             GAGTGCGAGCTCTTTCTTCAATGTCGTACCACGCAGAACTCGACGCCGCCAAAAAGGCCG
 
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JMSF019F02-           CCTCTCTCGCTGCTCGCCTCTGCCAGAAAGTTCAGAAAGCACTTTTGCAAGCCGATGTGC
JMFF025K05-           CCTCTCTCGCTGCTCGCCTCTGCCAGAAAGTTCAGAAAGCACTTTTGCAAGCCGATGTGC
                      ____________________________________________________________
consensus             CCTCTCTCGCTGCTCGCCTCTGCCAGAAAGTTCAGAAAGCACTTTTGCAAGCCGATGTGC
 
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JMSF019F02-           AGTCNAAGTCAGA                                               
JMFF025K05-           AGTCAAAGTCAGATAAGAGTCCTGTCACTGTGGCTGATTATGGTTCACAGGCTGTGGTCA
                      ____________________________________________________________
consensus             AGTCAAAGTCAGATAAGAGTCCTGTCACTGTGGCTGATTATGGTTCACAGGCTGTGGTCA
 
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JMFF025K05-           GCTTTATTCTGCAGAAGGAGTTGCCTTCTAATTCGTTTTCATTAGTGGCAGAAGAGGACT
                      ____________________________________________________________
consensus             GCTTTATTCTGCAGAAGGAGTTGCCTTCTAATTCGTTTTCATTAGTGGCAGAAGAGGACT
 
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JMFF025K05-           CAGAAGACCTCCGTAAAGAAGAGTCACAAGAAACAATTCAACGCATCACAAAACTTGTGA
                      ____________________________________________________________
consensus             CAGAAGACCTCCGTAAAGAAGAGTCACAAGAAACAATTCAACGCATCACAAAACTTGTGA
 
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JMFF025K05-           ATGAAACTCTTGCTAGCAATGAATTAGGCATTACTTCTCCCTTGTCTCAAGAAGACGTGC
rJMFF025K05+                                                       CTCAAGAAGACGTGC
                      ____________________________________________________________
consensus             ATGAAACTCTTGCTAGCAATGAATTAGGCATTACTTCTCCCTTGTCTCAAGAAGACGTGC
 
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JMFF025K05-           TTGCTGCAATTGACAGTGGTAGATCTAATGGGGGTCCTTCTGGTCGCCATTGGGTATTGG
rJMSF019F02+                                                             GGGTATTGG
rJMFF025K05+          TTGCTGCAATTGACAGTGGTAGATCTAATGGGGGTCCTTCTGGTCGCCATTGGGTATTGG
                      ____________________________________________________________
consensus             TTGCTGCAATTGACAGTGGTAGATCTAATGGGGGTCCTTCTGGTCGCCATTGGGTATTGG
 
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JMFF025K05-           ATCCTATTGATGGGACC                                           
rJMSF019F02+          ATCCTATTGATGGGACCAAAAGGGTTTCTAAGAGGTGACCAATATGCCATTGCATTGGGA
rJMFF025K05+          ATCNTATTGATGGGACC-AAAGGGTTTCTAAGAGGTGACCAATATGCCATTGCATTGGGA
                      ____________________________________________________________
consensus             ATCCTATTGATGGGACCAAAAGGGTTTCTAAGAGGTGACCAATATGCCATTGCATTGGGA
 
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rJMSF019F02+          TTGTTAGATGAAGGGAAGGTAGTTTTGGGTGTCCTAGCCTGCCCCAATCTTCCATTAGCT
rJMFF025K05+          TTGTTAGATGAAGGGAAGGTAGTTTTGGGTGTCCTAGCCTGCCCCAATCTTCCATTAGCT
                      ____________________________________________________________
consensus             TTGTTAGATGAAGGGAAGGTAGTTTTGGGTGTCCTAGCCTGCCCCAATCTTCCATTAGCT
 
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rJMSF019F02+          TCTGTTGCATACCATGAACATCAAGAGAACAGTGGCTGTCTATTTTTTGCTCAAGTTGGA
rJMFF025K05+          TCTGTTGCATACCATGATCATCAAGAGAACAGTGGCTGTCTATTTTTTGCTCAAGTTGGA
                      ____________________________________________________________
consensus             TCTGTTGCATACCATGATCATCAAGAGAACAGTGGCTGTCTATTTTTTGCTCAAGTTGGA
 
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rJMSF019F02+          GCTGGAACCTACATGCAAAGTCTAGATGGCTCTTCCCCCAAAAAGGTGCATGTTACAGGT
rJMFF025K05+          GCTGGAACCTACATGCAAAGTCTAGATGGCTCTTCCCCCAAAAAGGTACATGTTACAGAT
                      ____________________________________________________________
consensus             GCTGGAACCTACATGCAAAGTCTAGATGGCTCTTCCCCCAAAAAGGTGCATGTTACAGGT
 
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rJMSF019F02+          ATTGAAAACCCTGAAGAGGCATCATTTTTTGAATCTGTTGAAGCAGCACATTCGGTGCAT
rJMFF025K05+          ATTGAAAACCCTGAAGAGGCATCATTTTTTGAATCTGTTGAAGCAGCACATTCGATGCAT
                      ____________________________________________________________
consensus             ATTGAAAACCCTGAAGAGGCATCATTTTTTGAATCTGTTGAAGCAGCACATTCGGTGCAT
 
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rJMSF019F02+          GACTTATCTAGCTCGATAGCAAAGAAACTAGGTGTTAAAGCACCACCTGTTCGAATAGAT
rJMFF025K05+          GACTTATCTAGCTTGATAGCAAAGAAACTAGGTGTGAAAGCACCACCTGTTCGAATAGAT
                      ____________________________________________________________
consensus             GACTTATCTAGCTTGATAGCAAAGAAACTAGGTGTTAAAGCACCACCTGTTCGAATAGAT
 
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rJMSF019F02+          AGTCAGGCTAAGTATGGTGCGTTGTCCCGAGGAGACGGAGCTATATATTTGCGCTTTCCT
rJMFF025K05+          AGTCAGGCTAAGTATGGTGCGTTGTCCCGAGGAGACGGAGCTATATATTTGCGCTTTCCT
                      ____________________________________________________________
consensus             AGTCAGGCTAAGTATGGTGCGTTGTCCCGAGGAGACGGAGCTATATATTTGCGCTTTCCT
 
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rJMSF019F02+          CATAAAGGATACCGTGAGAAGATATGGGATCATGCAGCTGGATATCTTGTTGTTTCAGAA
rJMFF025K05+          CATAAAGGATACCGTGAGAAGATATGGGATCATGCAGCTGGATATCTTGTTGTTTCAGAA
                      ____________________________________________________________
consensus             CATAAAGGATACCGTGAGAAGATATGGGATCATGCAGCTGGATATCTTGTTGTTTCAGAA
 
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rJMSF019F02+          GCTGGAGGTATTGTGACAGATGCTGCAGGAAACCCATTGGACTTCTCCAAAGGAAGGTAC
rJMFF025K05+          GCTGGAGGTATTGTGACAGATGCTGCAGGAAACCCATTGGACTTCTCCAAAGGAAGGTAC
                      ____________________________________________________________
consensus             GCTGGAGGTATTGTGACAGATGCTGCAGGAAACCCATTGGACTTCTCCAAAGGAAGGTAC
 
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rJMSF019F02+          CTGGATTTGGACACTGGCATCATCGTTACCAACCAGAAGTTGATGCCTGCTCTGTTGAAG
rJMFF025K05+          CTGGATTTGGACACTGGCATCATCGTTACCAACCAGAAGTTGATGCCTGCTCTGTTGAAG
                      ____________________________________________________________
consensus             CTGGATTTGGACACTGGCATCATCGTTACCAACCAGAAGTTGATGCCTGCTCTGTTGAAG
 
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rJMSF019F02+          GCAGTTGGTGATTCTTTAGCTGAAAAAACTTCGTCGCTGTGATCTTTTTTATTTTATTAG
rJMFF025K05+          GCAGTTGGTGATTCTTTAGCTGAAAAAGCTTCGTCGCTGTGATATTTTTTATTTTATTAG
                      ____________________________________________________________
consensus             GCAGTTGGTGATTCTTTAGCTGAAAAAGCTTCGTCGCTGTGATCTTTTTTATTTTATTAG
 
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rJMSF019F02+          A--ATAACTACAAAATTTGTAGTAACTCTTGCTTGAATAA                    
rJMFF025K05+          AATATAACTACAAAATTTGTAGTAACTCTTGCTTGAATAAGTGCGCTATTATTAAGGACA
                      ____________________________________________________________
consensus             AATATAACTACAAAATTTGTAGTAACTCTTGCTTGAATAAGTGCGCTATTATTAAGGACA