| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006E09 | Sequence | 462 | 012304 (13) | emb|CDO97048.1| | 1e-45 | unnamed protein product [Coffea canephora] | 778 | 012304 (13) | emb|CDO97048.1| | 3e-43 | unnamed protein product [Coffea canephora] |
| JMFF009D10 | Sequence | 521 | 012304 (13) | emb|CDO97048.1| | 3e-45 | unnamed protein product [Coffea canephora] | 570 | 012304 (13) | gb|AAF31402.1| | 2e-16 | putative glycine-rich RNA binding protein 1 [Catharanthus roseus] |
| JMFF023J09 | Sequence | 463 | 012304 (13) | emb|CDO97048.1| | 2e-45 | unnamed protein product [Coffea canephora] | 766 | 012304 (13) | emb|CDO97048.1| | 2e-43 | unnamed protein product [Coffea canephora] |
| JMFN002G12 | Sequence | 488 | 012304 (13) | emb|CDO97048.1| | 2e-45 | unnamed protein product [Coffea canephora] | |||||
| JMFN006N08 | Sequence | 604 | 012304 (13) | emb|CDO97048.1| | 3e-44 | unnamed protein product [Coffea canephora] | |||||
| JMFN015M02 | Sequence | 627 | 012304 (13) | emb|CDO97048.1| | 5e-44 | unnamed protein product [Coffea canephora] | |||||
| JMFN028O04 | Sequence | 445 | 012304 (13) | ||||||||
| JMFN030B15 | Sequence | 296 | 012304 (13) | gb|EPS70351.1| | 3e-13 | hypothetical protein M569_04412, partial [Genlisea aurea] | |||||
| JMSF040G20 | Sequence | 678 | 012304 (13) | emb|CDO97048.1| | 9e-44 | unnamed protein product [Coffea canephora] | 737 | 012304 (13) | emb|CDO97048.1| | 2e-43 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFN028O04+ CGCA
____________________________________________________________
consensus CGCA
. : . : . : . : . : . :
JMFN028O04+ AATCTCTATTATTTCATTCCATGGAACAACGTTAATACAGATTTACAATATAACAGCAGC
rJMFF009D10- GCAGC
rJMFF006E09- TGGAACAACGTTAATACAGATTTACAATATAACAGCAGC
rJMSF040G20- GATTTACAATATAACAGCAGC
rJMFF023J09- TGGAACAACGTTAATACAGATTTACAATATAACAGCAGC
____________________________________________________________
consensus AATCTCTATTATTTCATTCCATGGAACAACGTTAATACAGATTTACAATATAACAGCAGC
. : . : . : . : . : . :
JMFN028O04+ GATCAAAATAGAAAGTGACACAG-TCGAATACATCGCACGGCAAACCCATAACCAGAACT
rJMFF009D10- GATCAAAATAGAAAGTGACACAG-TCGAATACATCGCACGGCAAACCCATAANCAGAACT
rJMFF006E09- GATCAAAATAGAAAGTGACACAG-TCGAATACATCGCACGGCAAACCCATAACCAGAACT
rJMSF040G20- GATCAAAATAGAAAGTGACACAGNTCGAATACATCGCACGGCAAACCCATAACCAGAACT
JMSF040G20+ CGGCNAACCCATAACCAGAANT
rJMFF023J09- GATCAAAATAGAAAGTGACACAG-TCGAATACATCGCACGGCAAACCCATAACCAGAACT
____________________________________________________________
consensus GATCAAAATAGAAAGTGACACAG-TCGAATACATCGCACGGCAAACCCATAACCAGAACT
. : . : . : . : . : . :
JMFN028O04+ AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
rJMFF009D10- AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTANACCTACTCCACTACC
rJMFF006E09- AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
rJMSF040G20- AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
JMSF040G20+ AAACGCAAACCAAGACCAAACACATGAATTATCTNTAAAATTTAGACCTACACCACTACC
JMFN006N08+ AAAATTTAGACCTACACCACTACC
JMFN015M02+ AGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
rJMFF023J09- AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
____________________________________________________________
consensus AAACGCAAACCAAGACCAAACACATGAATTATCTCTAAAATTTAGACCTACACCACTACC
. : . : . : . : . : . :
JMFN028O04+ ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
rJMFF009D10- ACTATAATGGNGGCCTAATCGGACNTCAACTTAATTCCTCCAGNTCCCATCANAGCCACC
rJMFF006E09- ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
rJMSF040G20- ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
JMSF040G20+ ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
JMFN006N08+ ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
JMFN015M02+ ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
rJMFF023J09- ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
____________________________________________________________
consensus ACTATAATGGTGGCCTAATCGAACATCAACTTAATTCCTCCAGCTCCCATCAGAGCCACC
. : . : . : . : . : . :
JMFN028O04+ ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
rJMFF009D10- ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
rJMFF006E09- ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
rJMSF040G20- ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMSF040G20+ ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMFN006N08+ ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMFN002G12+ ACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMFN030B15+ CCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMFN015M02+ ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
JMFF009D10+ CACCACCATANCCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
rJMFF023J09- ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
____________________________________________________________
consensus ACCCCTAGAATAACCACCACCATAACCGCGGTCGTTGCCGCCATATCCACGGTCATCACC
. : . : . : . : . : . :
JMFN028O04+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
rJMFF009D10- ACCATAGCTACNGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
rJMFF006E09- ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
rJMSF040G20- ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMSF040G20+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFN006N08+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFN002G12+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFN030B15+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFN015M02+ ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFF023J09+ GTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFF006E09+ TCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
JMFF009D10+ ACCATAGNTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
rJMFF023J09- ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
____________________________________________________________
consensus ACCATAGCTACGGTCTCCACCGCCATATCCACGGTCACGACCGCCACCATAACCTCCACC
. : . : . : . : . : . :
JMFN028O04+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
rJMFF009D10- ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
rJMFF006E09- ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
rJMSF040G20- ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMSF040G20+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFN006N08+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFN002G12+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFN030B15+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFN015M02+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFF023J09+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFF006E09+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
JMFF009D10+ ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
rJMFF023J09- ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
____________________________________________________________
consensus ATAACCACCTTCCCGTCGACCGTATCCGCCTCCGCCTCCACCCTCACGGCGACCACCACG
. : . : . : . : . : . :
JMFN028O04+ GAACCCTCCGCCGCCGCCACCG
rJMFF009D10- GAACCCTCCGCCGCNGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGNAACATTACG
rJMFF006E09- GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
rJMSF040G20- GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMSF040G20+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFN006N08+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFN002G12+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFN030B15+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFN015M02+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFF023J09+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFF006E09+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
JMFF009D10+ GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
rJMFF023J09- GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
____________________________________________________________
consensus GAACCCTCCGCCGCCGCCACCGCTTCCGCGAGACTGTGCTTCATTAACGGTAACATTACG
. : . : . : . : . : . :
rJMFF009D10- GNCGNCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCNT
rJMFF006E09- GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
rJMSF040G20- GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMSF040G20+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFN006N08+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFN002G12+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFN030B15+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFN015M02+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFF023J09+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFF006E09+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
JMFF009D10+ GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
rJMFF023J09- GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
____________________________________________________________
consensus GCCGTCTATGCTCTGGCCATTCATAGCCTCGATGGCGTCCTTCATGGAATGTTCGTCCTT
. : . : . : . : . : . :
rJMFF009D10- GAATGTGACAAAGCCAANTCCCCTGGATCTACCANTCNCACGATCATTGATAATCTTCGA
rJMFF006E09- GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
rJMSF040G20- GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMSF040G20+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFN006N08+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFN002G12+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFN030B15+ GAATGTGACGAAGCCAAATCC
JMFN015M02+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFF023J09+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFF006E09+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
JMFF009D10+ GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
rJMFF023J09- GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
____________________________________________________________
consensus GAATGTGACAAAGCCAAATCCCCTGGATCTACCAGTCTCACGATCATTGATAATCTTCGA
. : . : . : . : . : . :
rJMFF009D10- TTCGAG
rJMFF006E09- TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
rJMSF040G20- TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMSF040G20+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFN006N08+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFN002G12+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFN015M02+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFF023J09+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFF006E09+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
JMFF009D10+ TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
rJMFF023J09- TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
____________________________________________________________
consensus TTCGAGAACCTCGCCAAACTGACCGAAAGCTTCATCAAGGGTTCGTTCGGTGGTGGCCCA
. : . : . : . : . : . :
rJMFF006E09- GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATA
rJMSF040G20- GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGANA
JMSF040G20+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFN006N08+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFN002G12+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFN015M02+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFF023J09+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFF006E09+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
JMFF009D10+ GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
rJMFF023J09- GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
____________________________________________________________
consensus GGCCAAGCCACCGACGAAACACCTAAACTCAACATCTGCTGCAGCCATTTTTATAAGAAA
. : . : . : . : . : . :
rJMSF040G20- GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGATC
JMSF040G20+ GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGATC
JMFN006N08+ GAAAGATCAACAAAACTGAAAGCAACAA
JMFN002G12+ GAAAGATCAACAAAACTGAAAGCAACAAAGGA
JMFN015M02+ GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAA
JMFF023J09+ GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGAT
JMFF006E09+ GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGAT
JMFF009D10+ GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGAT
rJMFF023J09- GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGATCGGTT
____________________________________________________________
consensus GAAAGATCAACAAAACTGAAAGCAACAAAGGAGAAGAAAGAGGCAAAAGATTGATCGGTT