| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF023I08 | Sequence | 439 | 002177 (4) | dbj|BAC58020.1| | 8e-40 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] | 751 | 012303 (4) | dbj|BAC58020.1| | 3e-112 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] |
| JMSF016J12 | Sequence | 542 | 002177 (4) | dbj|BAC58020.1| | 2e-63 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] | 786 | 012303 (4) | dbj|BAC58020.1| | 6e-129 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] |
| JMSF021H18 | Sequence | 287 | 002177 (4) | dbj|BAC58020.1| | 4e-34 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] | 299 | 012303 (4) | dbj|BAC58020.1| | 2e-60 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] |
| JMSF029A04 | Sequence | 468 | 002177 (4) | dbj|BAC58020.1| | 2e-60 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] | 743 | 012303 (4) | dbj|BAC58020.1| | 5e-113 | angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF021H18+ GTGGAACTGATCA
rJMSF016J12+ AAAATGATGATGGTGCTGCATTGAGTGGAACTGATCA
____________________________________________________________
consensus AAAATGATGATGGTGCTGCATTGAGTGGAACTGATCA
. : . : . : . : . : . :
rJMSF021H18+ AGTGTTGAGTTCTAGTCCACGATTTTCATCTCCAGAAGATGTTAGAAGTAGAAAAACTCC
rJMSF016J12+ AGTGTTGAGTTCTAGTCCACGATTTTCATCTCCAGAAGATGTTAGAAGTAGAAAAACTCC
rJMSF029A04+ CTCCAGAAGATGTTAGAAGTAGAAAAACTCC
rJMFF023I08+ CTCCAGAAGATGTTAGAAGTAGAAAAACTCC
____________________________________________________________
consensus AGTGTTGAGTTCTAGTCCACGATTTTCATCTCCAGAAGATGTTAGAAGTAGAAAAACTCC
. : . : . : . : . : . :
rJMSF021H18+ AATTGAGTTCATTCAAGAATCATCTTCAGAGAAACTTCTGAAATCGAACATGGATCTCAG
rJMSF016J12+ AATTGAGTTCATTCAAGAATCATCTTCAGAGAAACTTCTGAAATCGAACATGGATCTCAG
rJMSF029A04+ AATTGAGTTCATTCAAGAATCATCTTCAGAGAAACTTCTGAAATCGAACATGGATCTCAG
rJMFF023I08+ AATTGAGTTCATTCAAGAATCATCTTCAGAGAAACTTCTGAAATCGAACATGGATCTCAG
____________________________________________________________
consensus AATTGAGTTCATTCAAGAATCATCTTCAGAGAAACTTCTGAAATCGAACATGGATCTCAG
. : . : . : . : . : . :
rJMSF021H18+ TAGAAAATCTGGTGAACTATTGAAAGATGGATATATCATAGCTTTGTATGCAAGACATCA
rJMSF016J12+ TAGAAAATCTGGTGAACTATTGAAAGATGGATATATCATAGCTTTGTATGCAAGACATCA
rJMSF029A04+ TAGAAAATCTGGTGAACTATTGAAAGATGGATATATCATAGCTTTGTATGCAAGACATCA
rJMFF023I08+ TAGAAAATCTGGTGAACTATTGAAAGATGGATATATCATAGCTTTGTATGCAAGACATCA
____________________________________________________________
consensus TAGAAAATCTGGTGAACTATTGAAAGATGGATATATCATAGCTTTGTATGCAAGACATCA
. : . : . : . : . : . :
rJMSF021H18+ CCCTGCACTCCACGTTTCCAGGCAAAGAGTTCAAGGAGGAGGTTGGTTTCTTGATTCAAT
rJMSF016J12+ CCCTGCACTCCACGTTTCCAGGCAAAGAGTTCAAGGAGGAGGTTGGTTTCTTGATTCAAT
rJMSF029A04+ CCCTGCACTCCACGTTTCCAGGCAAAGAGTTCAAGGAGGAGGTTGGTTTCTTGATTCAAT
rJMFF023I08+ CCCTGCACTCCACGTTTCCAGGCAAAGAGTTCAAGGAGGAGGTTGGTTTCTTGATTCAAT
____________________________________________________________
consensus CCCTGCACTCCACGTTTCCAGGCAAAGAGTTCAAGGAGGAGGTTGGTTTCTTGATTCAAT
. : . : . : . : . : . :
rJMSF021H18+ GTCAAATATCACAAAGAGAGACCCAGCAGCACAGTTCCTTGTTGTT
rJMSF016J12+ GTCAAATATCACAAAGAGAGACCCAGCAGCACAGTTCCTTGTTGTTTACAGAAGCAAGGA
rJMSF029A04+ GTCAAATATCACAAAGAGAGACCCAGCAGCACAGTTCCTTGTTGTTTACAGAAGCAAGGA
rJMFF023I08+ GTCAAATATCACAAAGAGAGACCCAGCAGCACAGTTCCTTGTTGTTTACAGAAGCAAGGA
____________________________________________________________
consensus GTCAAATATCACAAAGAGAGACCCAGCAGCACAGTTCCTTGTTGTTTACAGAAGCAAGGA
. : . : . : . : . : . :
rJMSF016J12+ TACTATTGGGCTGCGATCATTTACTGCTGGTGGAAAGCTATTGCAGATTAATAGGCGGAT
rJMSF029A04+ TACTATTGGGCTGCGATCATTTACTGCTGGTGGAAAGCTATTGCAGATTAATAGGCGGAT
rJMFF023I08+ TACTATTGGGCTGCGATCATTTACTGCTGGTGGAAAGCTATTGCAGATTAATAGGCGGAT
____________________________________________________________
consensus TACTATTGGGCTGCGATCATTTACTGCTGGTGGAAAGCTATTGCAGATTAATAGGCGGAT
. : . : . : . : . : . :
rJMSF016J12+ GGAATTTGTATTTGCCAGTCACAGTTTTGATGTTTGGGAAAGTTGGACATTTGAAGGTTC
rJMSF029A04+ GGAATTTGTATTTGCCAGTCACAGTTTTGATGTTTGGGAAAGTTGGACATTTGAAGGTTC
rJMFF023I08+ GGAATTTGTATTTGCCAGTCACAGTTTTGATGTTTGGGAAAGTTGGACATTTGAAGGTTC
____________________________________________________________
consensus GGAATTTGTATTTGCCAGTCACAGTTTTGATGTTTGGGAAAGTTGGACATTTGAAGGTTC
. : . : . : . : . : . :
rJMSF016J12+ TTTGGAGGAATGTAGGCTGGTGAACTGTAGAAATCCTTTGGCTATTCTGGATGTACGCAT
rJMSF029A04+ TTTGGAGGAATGTAGGCTGGTGAACTGTAGAAATCCTTTGGCTATTCTGGATGTACGCAT
rJMFF023I08+ TTTGGAGGAATGTAGGCTGGTGAACTGTAGAAATCCTTTGGCTATTCTGGATGTACGCAT
____________________________________________________________
consensus TTTGGAGGAATGTAGGCTGGTGAACTGTAGAAATCCTTTGGCTATTCTGGATGTACGCAT
. : . : . : . : . : . :
rJMSF016J12+ CGAAGTCCTTGCAGCTATTGGAGAAGATGGTATTACACGCTGGCTTGATTAGGTAGTGAC
rJMSF029A04+ CGAAGTCCTTGCAGCTATTGGAGAAGATGGTATTACACGCTGGCTTGATTAGGTAGTGAC
rJMFF023I08+ CGAAGTCCTTGCAGCTATTGGAGAAGATGGTATTACACGCTGGCTTGATTAGGTAGTGAC
____________________________________________________________
consensus CGAAGTCCTTGCAGCTATTGGAGAAGATGGTATTACACGCTGGCTTGATTAGGTAGTGAC
. : . : . : . : . : . :
rJMSF016J12+ TTTCAAATGTTTGTGCAGAGTCCTTAACAAATTCATCTGAATTAGATCAGTGTTTGCGAA
rJMSF029A04+ TTTCAAATGTTTGTGCAGAGTCCTTAACAAATTCATCTGAATTAGATCAGTGTTTGCGAA
rJMFF023I08+ TTTCAAATGTTTGTGCAGAGTCCTTAACAAATTCATCTGAATTAGATCAGTGTTTGCGAA
____________________________________________________________
consensus TTTCAAATGTTTGTGCAGAGTCCTTAACAAATTCATCTGAATTAGATCAGTGTTTGCGAA
. : . : . : . : . : . :
rJMSF016J12+ ATTAGAAACGAAAGAGAAAAGGTTGGGTCATCATCAACCATTCCGGTCTTTAAGAGTTGC
rJMSF029A04+ ATTAGAAACGAAAGAGAAAAGGTTGGGTCATCATCAACCATTCCGGTCTTTAAGAGTTGC
rJMFF023I08+ ATTAGAAACGAAAGAGAAAAGGTTGGGTCATCATCAACCATTCCGGTCTTTAAGAGTTGC
____________________________________________________________
consensus ATTAGAAACGAAAGAGAAAAGGTTGGGTCATCATCAACCATTCCGGTCTTTAAGAGTTGC
. : . : . : . : . : . :
rJMSF016J12+ CGAGTGTTAGTACTGTTTGATATTCTGTCTCTCCCTTGGTATTGAAATGTTGTAATCCCG
rJMSF029A04+ CGAGTGTTAGTACTGTTTGATATTCTGTCTCTCCCTTGGTATTGAAATGTTGTAATCCCG
rJMFF023I08+ CGAGTGTTAGTACTGTTTGATATTCTGTCTCTCCCTTGGTATTGAAATGTTGTAATCCCG
____________________________________________________________
consensus CGAGTGTTAGTACTGTTTGATATTCTGTCTCTCCCTTGGTATTGAAATGTTGTAATCCCG
. : . : . : . : . : . :
rJMSF016J12+ TGGAAATGCCTCTTCATTCTCAGCCTGCC
rJMSF029A04+ TGGAAATGCCTCTTCATTCTCAGCCTGCCTACCCTCCGTTTATCACGACTC
rJMFF023I08+ TGGAAATGCCTCTTCATTCTCAGCCTGCCTACCCTCCGTTTATCACGACTCTAAAACATA
____________________________________________________________
consensus TGGAAATGCCTCTTCATTCTCAGCCTGCCTACCCTCCGTTTATCACGACTCTAAAACATA