Contig 012302:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006H02Sequence588008735 (2)ref|XP_009771290.1|9e-80PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]756012302 (2)emb|CDP03600.1|2e-90unnamed protein product [Coffea canephora]
JMFF022D01Sequence334008735 (2)ref|XP_009771290.1|5e-34PREDICTED: CSC1-like protein At4g02900, partial [Nicotiana sylvestris]674012302 (2)emb|CDP03600.1|5e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF006H02+                                 TTTTCCATTTGTGAGCCTCGTATTCAGCTGTATTTCC
                      ____________________________________________________________
consensus                                    TTTTCCATTTGTGAGCCTCGTATTCAGCTGTATTTCC
 
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rJMFF006H02+          TGCTAGGACTCGTATACTCGGTGGTCACGCCTATACTCCTCCCTTTCATCATTGTATTCT
rJMFF022D01+                                                       TCATCATTGTATTCT
                      ____________________________________________________________
consensus             TGCTAGGACTCGTATACTCGGTGGTCACGCCTATACTCCTCCCTTTCATCATTGTATTCT
 
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rJMFF006H02+          TTGCTTTCGCATATATGGTGTTCCGCCATCAGATCATCAATGTGTATGATCAGAAGTACG
rJMFF022D01+          TTGCTTTCGCATATATGGTGTTCCGCCATCAGATCATCAATGTGTATGATCAGAAGTACG
                      ____________________________________________________________
consensus             TTGCTTTCGCATATATGGTGTTCCGCCATCAGATCATCAATGTGTATGATCAGAAGTACG
 
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rJMFF006H02+          AAAGTGGTGGAGCGTTTTGGCCAGATGTTCACCGTCGTATCACCATCGGGCTGATAATAT
rJMFF022D01+          AAAGTGGTGGAGCGTTTTGGCCAGATGTTCACCGTCGTATCACCATCGGGCTGATAATAT
                      ____________________________________________________________
consensus             AAAGTGGTGGAGCGTTTTGGCCAGATGTTCACCGTCGTATCACCATCGGGCTGATAATAT
 
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rJMFF006H02+          CCCAGCTCCTACTGATGGGACTGATGAGCACGAAAGACGCTGCTCAATCAACCCCGGTGA
rJMFF022D01+          CCCAGCTCCTACTGATGGGACTGATGAGCACGAAAGACGCTGCTCAATCAACCCCGGTGA
                      ____________________________________________________________
consensus             CCCAGCTCCTACTGATGGGACTGATGAGCACGAAAGACGCTGCTCAATCAACCCCGGTGA
 
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rJMFF006H02+          TTCTCGTTCTTCCGGTTTTAACCATCTGGTTTCATAAGGTCTGCAAGGGGAGATTCGAGT
rJMFF022D01+          TTCTCGTTCTTCCGGTTTTAACCATCTGGTTTCATAAGGTCTGCAAGGGGAGATTCGAGT
                      ____________________________________________________________
consensus             TTCTCGTTCTTCCGGTTTTAACCATCTGGTTTCATAAGGTCTGCAAGGGGAGATTCGAGT
 
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rJMFF006H02+          CTGCATTTGTCAAGTTCCCATTGCAGGAAGCAATGGTGAAAGACACGTTGGAGCGGGCAA
rJMFF022D01+          CTGCATTTGTCAAGTTCCCATTGCAGGAAGCAATGGTGAAAGACACGTTGGAGCGGGCAA
                      ____________________________________________________________
consensus             CTGCATTTGTCAAGTTCCCATTGCAGGAAGCAATGGTGAAAGACACGTTGGAGCGGGCAA
 
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rJMFF006H02+          CCGAGCCGAATCTGGACTTGAAAGCTTATCTCCATGATGCTTATGTTCATCCTGTGTTTA
rJMFF022D01+          CCGAGCCGAATCTGGACTTGAAAGCTTATCTCCATGATGCTTATGTTCATCCTGTGTTTA
                      ____________________________________________________________
consensus             CCGAGCCGAATCTGGACTTGAAAGCTTATCTCCATGATGCTTATGTTCATCCTGTGTTTA
 
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rJMFF006H02+          AGGAAGCTGGGGCTGAGGGTTCTGCAGCAGCTTCAATGGAGGAGGAGGATAGCAACTATC
rJMFF022D01+          AGGAAGCTGGGGCTGAGGGTTCTGCAGCAGCTTCAATGGAGGAGGAGGATAGCAACTATC
                      ____________________________________________________________
consensus             AGGAAGCTGGGGCTGAGGGTTCTGCAGCAGCTTCAATGGAGGAGGAGGATAGCAACTATC
 
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rJMFF006H02+          TTGTTGCAACCAAGAGAAGTTCCCGCGTGTGTAGTAACACGGAAACCGGGTCCGATGTTG
rJMFF022D01+          TTGTTGCAACCAAGAGAAGTTCCCGCGTGTGTAGTAACACGGAAACCGGGTCCGATGTTG
                      ____________________________________________________________
consensus             TTGTTGCAACCAAGAGAAGTTCCCGCGTGTGTAGTAACACGGAAACCGGGTCCGATGTTG
 
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rJMFF006H02+          TTTGAGGAATGACATCTTGTCCCGTCTGTCTGGTTTTATTCATTCGTCAAATCAATTCTT
rJMFF022D01+          TTTGAGGAATGACATCTTGTCCCGTCTGTCTGGTTTTATTCATTCGTCAAATCAATTCTT
                      ____________________________________________________________
consensus             TTTGAGGAATGACATCTTGTCCCGTCTGTCTGGTTTTATTCATTCGTCAAATCAATTCTT
 
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rJMFF006H02+          TATTTTTAATTTTTTTTAAATAGTTTTTCTTGAAATTTTTGTCACTGCATTTGACTGGCA
rJMFF022D01+          TATTTTTAATTTTTTTTAAATAGTTTTTCTTGAAATTTTTGTCACTGCATTTGACTGGCA
                      ____________________________________________________________
consensus             TATTTTTAATTTTTTTTAAATAGTTTTTCTTGAAATTTTTGTCACTGCATTTGACTGGCA
 
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rJMFF006H02+          TTCTGTTTGTTACGGAGTACTTTACAATGTGTGCTTGTATAATACCCACGTAAGAACAT 
rJMFF022D01+          TTCTGTTNGTTACGGAGTNCTNTACAANGNGTGC-TGTATAATACCCACGTAAGAACATA
                      ____________________________________________________________
consensus             TTCTGTTTGTTACGGAGTACTTTACAATGTGTGCTTGTATAATACCCACGTAAGAACATA