Contig 012301:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022A16Sequence570005097 (3)ref|XP_008376131.1|5e-64PREDICTED: dynamin-related protein 1B-like [Malus domestica]332012301 (3)emb|CDP08676.1|5e-44unnamed protein product [Coffea canephora]
JMSF024D21Sequence666005097 (3)gb|EPS62179.1|6e-89phragmoplastin, partial [Genlisea aurea]705012301 (3)ref|XP_006339704.1|5e-145PREDICTED: dynamin-related protein 5A-like [Solanum tuberosum]
JMSF051C09Sequence693005097 (3)gb|EPS62179.1|3e-96phragmoplastin, partial [Genlisea aurea]733012301 (3)ref|XP_006339704.1|1e-147PREDICTED: dynamin-related protein 5A-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF051C09+                                                       GGAAAATGTACGGAA
                      ____________________________________________________________
consensus                                                          GGAAAATGTACGGAA
 
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rJMSF024D21+                    GAAGCTGATGGATATCAACCTCATTTGATAGCCCCTGAACAAGGATATCG
rJMSF051C09+          GCTTATAACTGAAGCTGATGGATATCAACCTCATTTGATAGCCCCTGAACAAGGATATCG
                      ____________________________________________________________
consensus             GCTTATAACTGAAGCTGATGGATATCAACCTCATTTGATAGCCCCTGAACAAGGATATCG
 
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rJMSF024D21+          TCGTCTCATTGAATCTTCAGTGATTAGTATTAAGGGTCCTGCCGAGGCTTCTGTTGATGC
rJMSF051C09+          TCGTCTCATTGAATCTTCAGTGATTAGTATTAAGGGTCCTGCCGAGGCTTCTGTTGATGC
                      ____________________________________________________________
consensus             TCGTCTCATTGAATCTTCAGTGATTAGTATTAAGGGTCCTGCCGAGGCTTCTGTTGATGC
 
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rJMSF024D21+          GGTTCATGCTATACTGAAGGATCTCATTCACAAGGCAATTAGTGAGACTACGGAGCTAAA
rJMSF051C09+          GGTTCATG---TACTGAAGGATCTCATTCACAAGGCAATTAGTGAGACTACGGAGCTAAA
                      ____________________________________________________________
consensus             GGTTCATGCTATACTGAAGGATCTCATTCACAAGGCAATTAGTGAGACTACGGAGCTAAA
 
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rJMSF024D21+          GCAGTACCCCTCTCTCAGAGTGGAGGTCAGTAGTGCAGCTGTTGAATCATTGGAAAGAAT
rJMSF051C09+          GCAGTACCCCTCTCTCAGAGTGGAGGTCAGTAGTGCAGCTGTTGAATCATTGGAAAGAAT
                      ____________________________________________________________
consensus             GCAGTACCCCTCTCTCAGAGTGGAGGTCAGTAGTGCAGCTGTTGAATCATTGGAAAGAAT
 
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rJMSF024D21+          GAGGGATGAAAGCAAGAAAGCCACTCTACAGCTTGTTGAAATGGAGTGTAGTTACCTTAC
rJMSF051C09+          GAGGGATGAAAGCAAGAAAGCCACTCTACAGCTTGTTGAAATGGAGTGTAGTTACCTTAC
                      ____________________________________________________________
consensus             GAGGGATGAAAGCAAGAAAGCCACTCTACAGCTTGTTGAAATGGAGTGTAGTTACCTTAC
 
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rJMSF024D21+          TGTAGATTTCTTCCGAAAACTGCCTCAAGATATTGAGAAGGGTGGAAATCCAACACATTC
rJMSF051C09+          TGTAGATTTCTTCCGAAAACTGCCTCAAGATATTGAGAAGGGTGGAAATCCAACACATTC
                      ____________________________________________________________
consensus             TGTAGATTTCTTCCGAAAACTGCCTCAAGATATTGAGAAGGGTGGAAATCCAACACATTC
 
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rJMSF024D21+          AATTTTTGACAGATATAATGATTCCTATCTGCGGAGAATTGGATCAAATGTATTGTCTTA
rJMSF051C09+          AATTTTTGACAGATATAATGATTCCTATCTGCGGAGAATTGGATCAAATGTATTGTCTTA
rJMFF022A16+                                      CTGCGGAGAATTGGATCNAATNTATTGTCTTA
                      ____________________________________________________________
consensus             AATTTTTGACAGATATAATGATTCCTATCTGCGGAGAATTGGATCAAATGTATTGTCTTA
 
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rJMSF024D21+          TGTCAATATGGTATGTGCAAGCTTGAGGAACTCCATTCCTAAGTCTATTGTTTACTGTCA
rJMSF051C09+          TGTCAATATGGTATGTGCAAGCTTGAGGAACTCCATTCCTAAGTCTATTGTTTACTGTCA
rJMFF022A16+          CGTCNATATGGTANGTGCAAGCTNGNGGNACTCCATTCNTAAGTCTATTNTTTACTGTCA
                      ____________________________________________________________
consensus             TGTCAATATGGTATGTGCAAGCTTGAGGAACTCCATTCCTAAGTCTATTGTTTACTGTCA
 
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rJMSF024D21+          AGTGCGAGAAGCGAAACGTAGCTTGCTTGATCACTTCTTCGCTGATTTGGGCAAAAAGGA
rJMSF051C09+          AGTGCGAGAAGCGAAACGTAGCTTGCTTGATCACTTCTTCGCTGATTTGGGCAAAAAGGA
rJMFF022A16+          AGTGNGAGAAGCGAANCGTAGCTTNCTTGATCACTTNTTCGCTGATTTGGGCAAAAAGGA
                      ____________________________________________________________
consensus             AGTGCGAGAAGCGAAACGTAGCTTGCTTGATCACTTCTTCGCTGATTTGGGCAAAAAGGA
 
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rJMSF024D21+          GGCGAAACAGCTGGGCAAACTTTTGGACGAGGATCCAGCTATAATGCAGAGACGTGTATC
rJMSF051C09+          GGCGAAACAGCTGGGCAAACTTTTGGACGAGGATCCAGCTATAATGCAGAGACGTGTATC
rJMFF022A16+          GGCGAAACAGCTGGGCAAACTTTTGGACGAGGATCCAGCTATAATGCAGAGACGTGTATC
                      ____________________________________________________________
consensus             GGCGAAACAGCTGGGCAAACTTTTGGACGAGGATCCAGCTATAATGCAGAGACGTGTATC
 
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rJMSF024D21+          CTTGGCTAAGAGATTAGAGCTGTACAGAGCTGCTCAAGCAGAGATAGATACAGTTGCATG
rJMSF051C09+          CTTGGCTAAGAGATTAGAGCTGTACAGAGCTGCTCAAGCAGAGATAGATACAGTTGCATG
rJMFF022A16+          CTTGGCTAAGAGATTAGAGCTGTACAGAGCTGCTCAAGCAGAGATAGATACAGTTGCATG
                      ____________________________________________________________
consensus             CTTGGCTAAGAGATTAGAGCTGTACAGAGCTGCTCAAGCAGAGATAGATACAGTTGCATG
 
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rJMSF024D21+          GTCGAAATA                                                   
rJMSF051C09+          GTCGAAATA                                                   
rJMFF022A16+          GTCGAAATAGACAGACATCTAAATATATTTCATGCGAATTATTTGTTTATCACTATTTAA
                      ____________________________________________________________
consensus             GTCGAAATAGACAGACATCTAAATATATTTCATGCGAATTATTTGTTTATCACTATTTAA