Contig 012300:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035N13+                                                                CCACGA
rJMFF021J08+                                                                CCACGA
                      ____________________________________________________________
consensus                                                                   CCACGA
 
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rJMSF035N13+          GCAAAATGCGTATGATTTGTCCAAAAACATATGGGGTAGCCTTAAAGCCCAGAATGGGAG
rJMFF021J08+          GCAAAATGCGTATGATTTGTCCAAAAACATATGGGGTAGCCTTAAAGCCCAGAATGGGAG
                      ____________________________________________________________
consensus             GCAAAATGCGTATGATTTGTCCAAAAACATATGGGGTAGCCTTAAAGCCCAGAATGGGAG
 
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rJMSF035N13+          TGTTGTTAAAGCTGCAGAAACCTCGAAAGCTAGTAATGCAAGTGCAAGGAAAGACCGGAT
rJMFF021J08+          TGTTGTTAAAGCTGCAGAAACCTCGAAAGCTAGTAATGCAAGTGCAAGGAAAGACCGGAT
                      ____________________________________________________________
consensus             TGTTGTTAAAGCTGCAGAAACCTCGAAAGCTAGTAATGCAAGTGCAAGGAAAGACCGGAT
 
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rJMSF035N13+          TAAGAATGCTGTTATTCCTGTTAAGGCTTCCACTGTAGCAGCAGCTGAGGTGGTTGATCA
rJMFF021J08+          TAAGAATGCTGTTATTCCTGTTAAGGCTTCCACTGTAGCAGCAGCTGAGGTGGTTGATCA
                      ____________________________________________________________
consensus             TAAGAATGCTGTTATTCCTGTTAAGGCTTCCACTGTAGCAGCAGCTGAGGTGGTTGATCA
 
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rJMSF035N13+          TGTTTTGGATGAAGAGAAAGAAGCTAACGCAAACATGGATGTTGATACCAATGTGGAAGG
rJMFF021J08+          TGTTTTGGATGAAGAGAAAGAAGCTAACGCAAACATGGATGTTGATACCAATGTGGAAGG
                      ____________________________________________________________
consensus             TGTTTTGGATGAAGAGAAAGAAGCTAACGCAAACATGGATGTTGATACCAATGTGGAAGG
 
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rJMSF035N13+          TTCCAAGAGTTTGAATTTGAGTGGAGGAAGTCTCTTTGGGAAGTCATTGAATGAGTTGGC
rJMFF021J08+          TTCCAAGAGTTTGAATTTGAGTGGAGGAAGTCTCTTTGGGAAGTCATTGAATGAGTTGGC
                      ____________________________________________________________
consensus             TTCCAAGAGTTTGAATTTGAGTGGAGGAAGTCTCTTTGGGAAGTCATTGAATGAGTTGGC
 
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rJMSF035N13+          AGAGTGGATTGATAAGAACAAGGTTGGGCTTAGCGAGGAAAAATTGATTGAGATGGAGGG
rJMFF021J08+          AGAGTGGATTGATAAGAACAAGGTTGGGCTTAGCGAGGAAAAATTGATTGAGATGGAGGG
                      ____________________________________________________________
consensus             AGAGTGGATTGATAAGAACAAGGTTGGGCTTAGCGAGGAAAAATTGATTGAGATGGAGGG
 
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rJMSF035N13+          GAAGTGGAAGGCCCTTAAAGTAGCTGAGCTCGAGCTGTTCTTGAAAAAGGCTGCCTTGAT
rJMFF021J08+          GAAGTGGAAGGCCCTTAAAGTAGCTGAGCTCGAGCTGTTCTTGAAAAAGGCTGCCTTGAT
                      ____________________________________________________________
consensus             GAAGTGGAAGGCCCTTAAAGTAGCTGAGCTCGAGCTGTTCTTGAAAAAGGCTGCCTTGAT
 
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rJMSF035N13+          TCAGGAGCAGGGAAGACTGGTTCTGGATGCACTGAAATAGGTTTGCAGGTATATTATGTT
rJMFF021J08+          TCAGGAGCAGGGAAGACTGGTTCTGGATGCACTGAAATAGGTTTGCAGGTATATTATGTT
                      ____________________________________________________________
consensus             TCAGGAGCAGGGAAGACTGGTTCTGGATGCACTGAAATAGGTTTGCAGGTATATTATGTT
 
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rJMSF035N13+          AACGGGGTGGCTAATATCGTTTTGTGCTTATAGGTCTATTTTGATGATGTTGGCTTTCTG
rJMFF021J08+          AACGGGGTGGCTAATATCGTTTTGTGCTTATAGGTCTATTTTGATGATGTTGGCTTTCTG
                      ____________________________________________________________
consensus             AACGGGGTGGCTAATATCGTTTTGTGCTTATAGGTCTATTTTGATGATGTTGGCTTTCTG
 
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rJMSF035N13+          CATTTACTATTTACTTTTCGTCTCAATTAACTAGCGGACGACTGGTGGTAGATCATGGTA
rJMFF021J08+          CATTTACTATTTACTTTTCGTCTCAATTAACTAGCGGACGACTGGTGGTAGATCATGGTA
                      ____________________________________________________________
consensus             CATTTACTATTTACTTTTCGTCTCAATTAACTAGCGGACGACTGGTGGTAGATCATGGTA
 
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rJMSF035N13+          GTAGAGGTTATTGTGTTTATTACATTATTTGAACTAGAGTACTTTATTGACATTCTAGCT
rJMFF021J08+          GTAGAGGTTATTGTGTTTATTACATTATTTGAACTAGAGTACTTTATTGACATTCTAGCT
                      ____________________________________________________________
consensus             GTAGAGGTTATTGTGTTTATTACATTATTTGAACTAGAGTACTTTATTGACATTCTAGCT
 
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rJMSF035N13+          TTGTATTAAGCTCACATGAATCTGCTCTTGACTCCTGT                      
rJMFF021J08+          TTGTATTAAGCTCACATGAATCTGCTCTTGACTCCTGTTGTTGTTTCCCGTTTATATCAT
                      ____________________________________________________________
consensus             TTGTATTAAGCTCACATGAATCTGCTCTTGACTCCTGTTGTTGTTTCCCGTTTATATCAT