Contig 012294:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019O24Sequence508007488 (5)ref|XP_009792116.1|1e-25PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP693012294 (5)
JMFF025E11Sequence306007488 (5)ref|XP_009792116.1|3e-12PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP783012294 (5)emb|CDO98567.1|8e-62unnamed protein product [Coffea canephora]
JMFF025O18Sequence290007488 (5)ref|XP_009792116.1|3e-13PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP709012294 (5)emb|CDO98567.1|8e-78unnamed protein product [Coffea canephora]
JMFF047A21Sequence458007488 (5)ref|XP_006353939.1|9e-23PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum]398012294 (5)
JMFF049H12Sequence618007488 (5)ref|XP_009792116.1|5e-37PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP187012294 (5)

Alignment

This contig is upended


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rJMFF025O18+                                                           GCTCGAACAGT
                      ____________________________________________________________
consensus                                                              GCTCGAACAGT
 
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rJMFF025O18+          TGATCCAACAGCTTATGGAAAATGATCCCAACCGTTATGGCACTCCTCCGGCTGCCAAAT
rJMFF025E11+                                                        TCCGGCTGCCAAAT
                      ____________________________________________________________
consensus             TGATCCAACAGCTTATGGAAAATGATCCCAACCGTTATGGCACTCCTCCGGCTGCCAAAT
 
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rJMFF025O18+          CTGCTGTTGAAGGGCTTCCGGATATCAAGATCACCCAGGAGATGCTAGCTTCAGACTCCT
rJMFF025E11+          CTGCTGTTGAAGGGCTTCCGGATATCACGATCACCCAGGAGATGCTAGCTTCAGACTCCT
                      ____________________________________________________________
consensus             CTGCTGTTGAAGGGCTTCCGGATATCACGATCACCCAGGAGATGCTAGCTTCAGACTCCT
 
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rJMFF025O18+          CTCAATGTGCTGTTTGCAAAGATAGTTTCGAGCTTGATGAGGAGGCGAAGCAAATGCCTT
rJMFF025E11+          CTCAATGTGCTGTTTGCAAAGATAGTTTCGAGCTTGATGAGGAGGCGAAGCAAATGCCTT
                      ____________________________________________________________
consensus             CTCAATGTGCTGTTTGCAAAGATAGTTTCGAGCTTGATGAGGAGGCGAAGCAAATGCCTT
 
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rJMFF025O18+          GCAAACATATATACCACAAGGATTGCATTATGCCCTGGCTCGAGTTGCATAACTCATGTC
rJMFF025E11+          GCAAACATATATACCACAAGGATTGCATTATGCCCTGGCTCGAGTTGCATAACTCATGTC
                      ____________________________________________________________
consensus             GCAAACATATATACCACAAGGATTGCATTATGCCCTGGCTCGAGTTGCATAACTCATGTC
 
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rJMFF025O18+          CAGTCTGTCGATACGAGTTGCCTACTGATGATCCTGATTATGAGAATAGGAGAAACTCAC
rJMFF025E11+          CAGTCTGTCGATACGAGTTGCCTACTGATGATCCTGATTATGAGAATAGGAGAAACTCAC
                      ____________________________________________________________
consensus             CAGTCTGTCGATACGAGTTGCCTACTGATGATCCTGATTATGAGAATAGGAGAAACTCAC
 
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rJMFF025O18+          AGCAGCCGACTAGGAACAACAATAACAGTTTCGGTTTGGGTATTGGGGGTTTGGGAGGTG
rJMFF025E11+          AGCAGCCGACTAGGAACAACAATAACAGTTTCGGTTTGGGTATTGGGGGTTTGGGAGGTG
                      ____________________________________________________________
consensus             AGCAGCCGACTAGGAACAACAATAACAGTTTCGGTTTGGGTATTGGGGGTTTGGGAGGTG
 
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rJMFF025O18+          GAGGAAATCAGGAGAATCCTCAGACACCTAGGACAGTGGAAAGAAGGTTTAGGGTTTCAT
rJMFF025E11+          GAGGAAATCAGGAGAATCCTCAGGCACCTAGGACAGTGGAAAGAAGGTTTAGGGTTTCAT
rJMFF019O24+                                      TAGGACAGTGGAAAGAAGGTTTAGGGTTTCAT
                      ____________________________________________________________
consensus             GAGGAAATCAGGAGAATCCTCAGGCACCTAGGACAGTGGAAAGAAGGTTTAGGGTTTCAT
 
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rJMFF025O18+          TGCCATGGCTGTTTGGAGGTTTTGGATCCCCTGCAGAGACCAGCAACAGTGGAGGAGGCA
rJMFF025E11+          TGCCATGGCTGTTTGGAGGTTTTGGATCCCCTGCAGAGACCAGCAACAGTGGAGGAGGCA
rJMFF019O24+          --CCATGGCTGTTTGGAGGTTTTGGATCCCCTGCAGAGACCAGCAACAGTGGAGGAGGCA
                      ____________________________________________________________
consensus             TGCCATGGCTGTTTGGAGGTTTTGGATCCCCTGCAGAGACCAGCAACAGTGGAGGAGGCA
 
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rJMFF025O18+          CTGGCAATAATAATGGAGGCGGCATGGGCAACAACAATGGAGGCAATGACAACAACAGAG
rJMFF025E11+          CTGGCAATAATAATGGAGGCGGCATGGGCAACAACAATGGAGGCAATGACAACAACAGAG
rJMFF047A21+           TGGCAATAATAATGGAGGCGGCATGGGCAACAACAATGGAGGCAATGACAACAACAGAG
rJMFF019O24+          CTGGCAATAATAATGGAGGCGGCATGGGCAACAACAATGGAGGCAATGACAACAACAGAG
                      ____________________________________________________________
consensus             CTGGCAATAATAATGGAGGCGGCATGGGCAACAACAATGGAGGCAATGACAACAACAGAG
 
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rJMFF025O18+          ATGATACTGGTCACGGCCCAAATTCAGGTTCCTGAAGTCAAG---------GGGGGAGAT
rJMFF025E11+          ATGATACTGGTCACGGCCCAAATTCAGGTTCCTAAAGTCAAGGTGATTGAAGGGGGAGAT
rJMFF047A21+          ATGATACTGGTCACGGCCCAAATTCAGGTTCCTAAAGTCAAGGTGATTGAAGGGGGAGAT
rJMFF019O24+          GTGATACTGGTCACGGCCCAAATTCAGGTTCCTGAAGTCAAGGTGATTGAAGGGGGAGAT
                      ____________________________________________________________
consensus             ATGATACTGGTCACGGCCCAAATTCAGGTTCCTGAAGTCAAGGTGATTGAAGGGGGAGAT
 
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rJMFF025O18+          AAAGCAGGGTGTTCAACTATGTATGAAGTTAGAGAAAAAGGAAATATTATACTGTGAGTA
rJMFF025E11+          AAAGCAGGGTGTTCAACTATGTATGAAGTTAGAGAAAAAGGAAATATTATACTGTGAGTA
rJMFF049H12+                                                                 GAGTA
rJMFF047A21+          AAAGCAGGGTGTTCAACTATGTATGAAGTTAGAGAAAAAGGAAATATTATACTGTGAGTA
rJMFF019O24+          AAAGCAGGGTGTTCAACTATGTATGAAGTTAGAGAAAAAGGAAATATTATACTGTGAGTA
                      ____________________________________________________________
consensus             AAAGCAGGGTGTTCAACTATGTATGAAGTTAGAGAAAAAGGAAATATTATACTGTGAGTA
 
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rJMFF025O18+          GTGATAGATGTGTTTCTAGTGCTTGATGACTAAAATGTT                     
rJMFF025E11+          GTGATAGATGTGTTTCTAGTGCTTGATGACTAAAATGTTTGTTTCAAAATTTTTTTCCCA
rJMFF049H12+          GTGATAGATGTGTTTTTAGTGCTTGATGACTAAAATGTTTGTTTCAAAATTTTTTTCCCA
rJMFF047A21+          GTGATAGATGTGTTTCTAGTGCTTGATGACTAAAATGTTTGTTTCAAAATTTTTTTCCCA
rJMFF019O24+          GTGATAGATGTGTTTCTAGTGCTTGATGACTAAAATGTTTGTTTCAAAATTTTTTTCCCA
                      ____________________________________________________________
consensus             GTGATAGATGTGTTTCTAGTGCTTGATGACTAAAATGTTTGTTTCAAAATTTTTTTCCCA
 
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rJMFF025E11+          TGCTTTTTTATGCTTCTCCTGCACATTTTTCAGAATATGGATGGATATATGTCCTGCTTC
rJMFF049H12+          TGCTTTTTTATGCTTTTCCTGCCCATTTTTCAGAATATGGAGGGATATATGTCCTGCTTC
rJMFF047A21+          TGCTTTTTTATGCTTCTCCTGCACATTTTTCAGAATATGGATGGATATATGTCCTGCTTC
rJMFF019O24+          TGCTTTTTTATGCTTCTCCTGCACATTTTTCAGAATATGGATGGATATATGTCCTGCTTC
                      ____________________________________________________________
consensus             TGCTTTTTTATGCTTCTCCTGCACATTTTTCAGAATATGGATGGATATATGTCCTGCTTC
 
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rJMFF025E11+          CTTCCATATATTATCTGGAACTTGGAATCACTGAAAGC                      
rJMFF049H12+          CTTCCATATATTATTTGGAACTTGGAATCCCTGAAAGCCCCCCAGATTCCTTCCTGC   
rJMFF047A21+          CTTCCATATATTATCTGGAACTTGGAATCACTGAAAGCACCACAGATTCCTTCCTGCCA 
rJMFF019O24+          CTTCCATATATTATCTGGAACTTGGAATCACTGAAAGCACCACAGATTCCTTCCTGCCAT
                      ____________________________________________________________
consensus             CTTCCATATATTATCTGGAACTTGGAATCACTGAAAGCACCACAGATTCCTTCCTGCCAT
 
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rJMFF019O24+          ATTTTCTCATGACATTTTTTTCATTTTCTTGTTTTTTGTTTGCTCAATGACTAGTCTGCT
                      ____________________________________________________________
consensus             ATTTTCTCATGACATTTTTTTCATTTTCTTGTTTTTTGTTTGCTCAATGACTAGTCTGCT
 
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rJMFF019O24+          CATGACTCATGAACGGTATGGCACTTTTTGGATTATCTCAAGTGAAACTTAAAATCCCAA
                      ____________________________________________________________
consensus             CATGACTCATGAACGGTATGGCACTTTTTGGATTATCTCAAGTGAAACTTAAAATCCCAA
 
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rJMFF019O24+          CTATATTTTGGATTTTGAGTCAATTTGATATTTGGATGTTTTGATTGAATGTAAGTTTAG
                      ____________________________________________________________
consensus             CTATATTTTGGATTTTGAGTCAATTTGATATTTGGATGTTTTGATTGAATGTAAGTTTAG
 
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rJMFF019O24+          TTTGAATATTGGGTGATAAAATTTCACCCATGCCTGATTTCAAATCCAAAATTATTTTTA
                      ____________________________________________________________
consensus             TTTGAATATTGGGTGATAAAATTTCACCCATGCCTGATTTCAAATCCAAAATTATTTTTA