Contig 012290:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF043F17+                                    CGACATTGAGTTCAGATCAGAGTTTGAAATAGCT
                      ____________________________________________________________
consensus                                       CGACATTGAGTTCAGATCAGAGTTTGAAATAGCT
 
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rJMSF043F17+          AGGTCCACCAAAACTTACAAGTCAGTTCTTCCAAGCATTGCCCAACATTTTTTGTGGGTA
rJMFF025K10+                                                          TTTTTGTGGGTA
rJMFF019D24+                                                          TTTTTGTGGGTA
                      ____________________________________________________________
consensus             AGGTCCACCAAAACTTACAAGTCAGTTCTTCCAAGCATTGCCCAACATTTTTTGTGGGTA
 
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rJMSF043F17+          AATGCGATCGCCTGCAAAAGATCATTTCTATAGTATCTGAAGCAGCTAAGCAAAGTTTGA
rJMFF025K10+          AATGCGATCGCCTGCAAAAGATCATTTCTATAGTATCTGAGGCAGCTAAGCAAAGTTTGA
rJMFF019D24+          AATGCGATCGCCTGCAAAAGATCATTTCTATAGTATCTGAAGCAGCTAAGCAAAGTTTGA
                      ____________________________________________________________
consensus             AATGCGATCGCCTGCAAAAGATCATTTCTATAGTATCTGAAGCAGCTAAGCAAAGTTTGA
 
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rJMSF043F17+          AGAAGAAAGGTATGCCTGTTCCACCGTGGAGGCAAGCTGAGTATGTCAAGGCCAAATGGT
rJMFF025K10+          AGAAGAAAGGTATGCCTGTTCCNCCATGGAGGCAAGCTGAGTATGTCAAGGCCAAATGGT
rJMFF019D24+          AGAAGAAAGGTATGCCTGTTCCACCGTGGAGGCAAGCTGAGTATGTCAAGGCCAAATGGT
                      ____________________________________________________________
consensus             AGAAGAAAGGTATGCCTGTTCCACCGTGGAGGCAAGCTGAGTATGTCAAGGCCAAATGGT
 
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rJMSF043F17+          TCTCTCCCTACACTAGAATTGACTTGACATCTTCAAAGGCAGAGACTTGTTTGAAGGTG-
rJMFF025K10+          TCTNTCCCTACACTAGAATTGATTTGACATNTTCAAAGGCAGAGACTTGTTTGAAGGTGG
rJMFF019D24+          TCTCTCCCTACACTAGAATTGACTTGACATCTTCAAAGGCAGAGACTTGTTTGAAGGTG-
                      ____________________________________________________________
consensus             TCTCTCCCTACACTAGAATTGACTTGACATCTTCAAAGGCAGAGACTTGTTTGAAGGTG-
 
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rJMSF043F17+          --GAGGAGGAGAGTGTGTGTTTGTGTGAAGCTAACTTGAAAGTGGGAAAATCGAAGCCGA
rJMFF025K10+          AGGAGGAGGAGAGTGTGTGTTTGTGTGAAGCTAACTTGAAAGTGGGAAAGCCGAAGCCGA
rJMFF019D24+          --GAGGAGGAGAGTGTGTGTTTGTGTGAAGCTAACTTGAAAGTGGGAAAATCGAAGCCGA
                      ____________________________________________________________
consensus             --GAGGAGGAGAGTGTGTGTTTGTGTGAAGCTAACTTGAAAGTGGGAAAATCGAAGCCGA
 
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rJMSF043F17+          GTAGTAGGAAGGAAGATGATGAGAGTTGCAGTGAGTTTGAGGTTCTGATGTTTGGAGAGG
rJMFF025K10+          GTAGTAGGAAGGAAGATGATGAGAGTTGCAGTGAGTTTGAGGTGCTGATGTTTGGAGAGG
rJMFF019D24+          GTAGTAGGAAGGAAGATGATGAGAGTTGCAGTGAGTTTGAGGTTCTGATGTTTGGAGAGG
                      ____________________________________________________________
consensus             GTAGTAGGAAGGAAGATGATGAGAGTTGCAGTGAGTTTGAGGTTCTGATGTTTGGAGAGG
 
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rJMSF043F17+          GAACTTCTAAGTCCAAATCTTATGGTGAA---GATGATGATAAGGAGGTGGGAGTAGGT-
rJMFF025K10+          GAACTTNTAAGTCCAAATNTTGTGGTGAAGATGATGATGATAAGGAGATGGGTGTAGGTG
rJMFF019D24+          GAACTTCTAAGTCCAAATCTTATGGTGAA---GATGATGATAAGGAGGTGGGAGTAGGT-
                      ____________________________________________________________
consensus             GAACTTCTAAGTCCAAATCTTATGGTGAA---GATGATGATAAGGAGGTGGGAGTAGGT-
 
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rJMSF043F17+          --GAAGCACAGGAGACTAAAGTGAATGGAGGGAAGAAAATGACTGGTTTATCTTCTTTGA
rJMFF025K10+          AAGAAGCNCGGGAGACTAAAGTGAATGGAGGGAAGAAAATGACTGGTTTATNTTNTTTGA
rJMFF019D24+          --GAAGCACAGGAGACTAAAGTGAATGGAGGGAAGAAAATGACTGGTTTATCTTCTTTGA
                      ____________________________________________________________
consensus             --GAAGCACAGGAGACTAAAGTGAATGGAGGGAAGAAAATGACTGGTTTATCTTCTTTGA
 
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rJMSF043F17+          TTGAAGAGAAGGCTTGAAG-TTTGGAGCTTTAATTCAATGGTCTCTGTGTTTTAGTATAC
rJMFF025K10+          TTGAAGAGAAGGCTTGAAGTTTTGGAGCTTCAATTCAATGG--TCTGTGTTTTAGTATAC
rJMFF019D24+          TTGAAGAGAAGGCTTGAAGTTTTGGAGCTTTAATTCAATGGTCTCTGTGTTTTAGTATAC
                      ____________________________________________________________
consensus             TTGAAGAGAAGGCTTGAAGTTTTGGAGCTTTAATTCAATGGTCTCTGTGTTTTAGTATAC
 
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rJMSF043F17+          TAATAATA---TTTTTTTTCTTTGTTTTCTGCCCCTGGGTTTTGGTATTTGGGGCACTAT
rJMFF025K10+          TAACAATATATTTTTTTTTTCTTGTTTTCTGCCCCTGGGTTTTGGTATTTGGGGCACTAT
rJMFF019D24+          TAATAATA---TTTTTTTTCTTTGTTTTCTGCCCCTGGGTTTTGGTATTTGGGGCACTAT
                      ____________________________________________________________
consensus             TAATAATA---TTTTTTTTCTTTGTTTTCTGCCCCTGGGTTTTGGTATTTGGGGCACTAT
 
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rJMSF043F17+          TGAATGCAGTCCAAGTATTATATGTCTTGGCCTAAGTATGTCTTGATCAAGTAATGCCCT
rJMFF025K10+          AGAACGCAGTCCAAGTATTATATGTCTTGGCCTAAGTATGTCTTGATCAAGTAATGCCCT
rJMFF019D24+          TGAATGCAGTCCAAGTATTATATGTCTTGGCCTAAGTATGTCTTGATCAAGTAATGCCCT
                      ____________________________________________________________
consensus             TGAATGCAGTCCAAGTATTATATGTCTTGGCCTAAGTATGTCTTGATCAAGTAATGCCCT
 
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rJMSF043F17+          TCACCTTTTAATGTAAGGGTACTAAGTGTTAATGCAATACAATCACTAGTAGTAATAG  
rJMFF025K10+          TCACCTTTTAATGTAAGGGTACTAAGTGTTAATGCAATACAATCACTAGTAGTAATAG  
rJMFF019D24+          TCACCTTTTAATGTAAGGGTACTAAGTGTTAATGCAATACAATCACTAGTAGTAATAGTG
                      ____________________________________________________________
consensus             TCACCTTTTAATGTAAGGGTACTAAGTGTTAATGCAATACAATCACTAGTAGTAATAGTG
 
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rJMFF019D24+          GCAGTAGTGAAGAATAGGGGTTGTGTAACTCTGACATTTTGGTGTGTGACCTCAATAATA
                      ____________________________________________________________
consensus             GCAGTAGTGAAGAATAGGGGTTGTGTAACTCTGACATTTTGGTGTGTGACCTCAATAATA