Contig 012289:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019C04Sequence624012289 (4)ref|XP_004137411.1|148PREDICTED: uncharacterized protein LOC101217964 [Cucumis sativus] ref|XP_0041735692012289 (4)ref|XP_004299359.1|146PREDICTED: uncharacterized protein LOC101304869 [Fragaria vesca subsp. vesca]
JMSF013M01Sequence253012289 (4)739012289 (4)ref|XP_004299359.1|160PREDICTED: uncharacterized protein LOC101304869 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


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JMSF013M01-                                                 GAAGTTGGTATAAAATCCTAAA
                      ____________________________________________________________
consensus                                                   GAAGTTGGTATAAAATCCTAAA
 
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JMSF013M01-           TAATTCTCGATGATGTCCAGAAATCATCACACTATTGAAAAACGTTAAAAGTAGTCTATT
JMFF019C04-                             AGAAATCATCACACTATTGAAAAACGTTAAAAGTAGTCTATT
                      ____________________________________________________________
consensus             TAATTCTCGATGATGTCCAGAAATCATCACACTATTGAAAAACGTTAAAAGTAGTCTATT
 
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JMSF013M01-           AGCTGTATTCATTATTCAATCACGCCTTCTATTTCAAAGCAGAGTTTGCTGCGACTTTCG
JMFF019C04-           AGCTGTATTCATTATTCAATCACGCCTTCTATTTCAAAGCAGAGTTTGCTGCGACTTTCG
                      ____________________________________________________________
consensus             AGCTGTATTCATTATTCAATCACGCCTTCTATTTCAAAGCAGAGTTTGCTGCGACTTTCG
 
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JMSF013M01-           TTTCTCATTCACAGCAACAATCGCGTTTCTACAGGATTTTTTTGATAAAGAAGTAATGGG
JMFF019C04-           TTTCTCATTCACAGCAACAATCGCGTTTCTACAGGATTTTTTTGATAAAGAAGTAATGGG
                      ____________________________________________________________
consensus             TTTCTCATTCACAGCAACAATCGCGTTTCTACAGGATTTTTTTGATAAAGAAGTAATGGG
 
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JMSF013M01-           AGAGCACTTAGTTTTGTGCGTTGACCGACTCATTACCCCTGAATCGGTTCA         
JMFF019C04-           AGAGCACTTAGTTTTGTGCGTTGACCGACTCATTACCCCTGAATCGGTTCAAACACTGCA
                      ____________________________________________________________
consensus             AGAGCACTTAGTTTTGTGCGTTGACCGACTCATTACCCCTGAATCGGTTCAAACACTGCA
 
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JMFF019C04-           ATGGTCAGAATCTGCAGGAGCTTCAGGAGGTAGTTCTTGCTCTCCCAAGGACCATAAGGT
                      ____________________________________________________________
consensus             ATGGTCAGAATCTGCAGGAGCTTCAGGAGGTAGTTCTTGCTCTCCCAAGGACCATAAGGT
 
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JMFF019C04-           TGATATTGAGGATTTGAAAGTAGAGGATGCTGGTGAAGATAAGCCGCTGCTGCTTCAGAG
                      ____________________________________________________________
consensus             TGATATTGAGGATTTGAAAGTAGAGGATGCTGGTGAAGATAAGCCGCTGCTGCTTCAGAG
 
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JMFF019C04-           TGTTGAATGCCGCATTTGCCAAGAGGAAGATGATCTTAGCAATTTGGAGGTTCCTTGCGC
                      ____________________________________________________________
consensus             TGTTGAATGCCGCATTTGCCAAGAGGAAGATGATCTTAGCAATTTGGAGGTTCCTTGCGC
 
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JMFF019C04-           TTGCAGTGGCAGCTTGAAGTTTGCGCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAA
                      ____________________________________________________________
consensus             TTGCAGTGGCAGCTTGAAGTTTGCGCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAA
 
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JMFF019C04-           AGGGGATATAACTTGTGAGATTTGCCACCAGACATTCTCCTGTTTGTGTAGCCTTACCAA
rJMSF013M01+                                                           AGCCTTACCAA
                      ____________________________________________________________
consensus             AGGGGATATAACTTGTGAGATTTGCCACCAGACATTCTCCTGTTTGTGTAGCCTTACCAA
 
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JMFF019C04-           CCGGGCTATACTGCTCCGCCACCCCCTCCATCTGACGATACTGACACTGATATCAGCCCG
rJMSF013M01+          CCGGGCTATACTGCTCCGCCACCCCCTCCATCTGACGATACTGACACTGATATCAGCCCG
rJMFF019C04+                                      CATCTGACGATACTGACACTGATATCAGCCCG
                      ____________________________________________________________
consensus             CCGGGCTATACTGCTCCGCCACCCCCTCCATCTGACGATACTGACACTGATATCAGCCCG
 
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JMFF019C04-           CGATGGACAATGGCTGGAGCTCAACTTGACATAAATGACCCT                  
rJMSF013M01+          CGATGGACAATGGCTGGAGCTCAACTTGACATAAATGACCCTAGGCTTCTGGCCATGGTT
rJMFF019C04+          CGATGGACAATGGCTGGAGCTCAACTTGACATAAATGACCCTAGGCTTCTGGCCATGGTT
                      ____________________________________________________________
consensus             CGATGGACAATGGCTGGAGCTCAACTTGACATAAATGACCCTAGGCTTCTGGCCATGGTT
 
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rJMSF013M01+          GAGCGCCGTCTTCTGGAGACTGATAATGATGAGTATGCTGATTCAAGTGCGAGTGGAGCT
rJMFF019C04+          GAGCGCCGTCTTCTGGAGACTGATAATGATGAGTATGCTGATTCAAGTGCGAGTGGAGCT
                      ____________________________________________________________
consensus             GAGCGCCGTCTTCTGGAGACTGATAATGATGAGTATGCTGATTCAAGTGCGAGTGGAGCT
 
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rJMSF013M01+          GCATTTTGTCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTTCTGAGGCATGCTATG
rJMFF019C04+          GCATTTTGTCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTTCTGAGGCATGCTATG
                      ____________________________________________________________
consensus             GCATTTTGTCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTTCTGAGGCATGCTATG
 
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rJMSF013M01+          ACCCTTGGTAACGGTGATGGGGATGCTGACGATGAAGTTTCTACCTTTTTCTCTCTTTTT
rJMFF019C04+          ACCCTTGGTAACGGTGATGGGGATGCTGACGATGAAGTTTCTACCTTTTTCTCTCTTTTT
                      ____________________________________________________________
consensus             ACCCTTGGTAACGGTGATGGGGATGCTGACGATGAAGTTTCTACCTTTTTCTCTCTTTTT
 
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rJMSF013M01+          CTGCTACGGGCTGCGGGTTTTCTTCTTCCATGCTACATCGTGGCTTGGGCTATTAGCATA
rJMFF019C04+          CTGCTACGGGCTGCGGGTTTTCTTCTTCCATGCTACATCGTGGCTTGGGCTATTAGCATA
                      ____________________________________________________________
consensus             CTGCTACGGGCTGCGGGTTTTCTTCTTCCATGCTACATCGTGGCTTGGGCTATTAGCATA
 
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rJMSF013M01+          TTACAACGCCGAAGGCAAAGACAGGAGGCAGCAGAAGTTACTTTTGTGCTGCCGGCAGGG
rJMFF019C04+          TTACAACGCCGAAGGCAAAGACAGGAGGCAGCAGAAGTTACTTTTGTGCTGCCGGCAGGG
                      ____________________________________________________________
consensus             TTACAACGCCGAAGGCAAAGACAGGAGGCAGCAGAAGTTACTTTTGTGCTGCCGGCAGGG
 
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rJMSF013M01+          CAACGCAGGGGTTTACACGTCACAATCACGCCCGGGCCTCCGGTGCCTGCAGCCGTGCCA
rJMFF019C04+          CAACGCAGGGGTTTACACGTCACAATCACGCCCGGGCCTCCGGTGCCTGCAGCCGTGCCA
                      ____________________________________________________________
consensus             CAACGCAGGGGTTTACACGTCACAATCACGCCCGGGCCTCCGGTGCCTGCAGCCGTGCCA
 
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rJMSF013M01+          GAAGCGCCAACTCCTCATCAGCAACTCCTATAAGTCGTTTCGTCTGGGACCGAGATGTCT
rJMFF019C04+          GAAGCGCCAACTCCTCATCAGCAACTCCTATAAGTCGTTTCGTCTGGGACCGAGATGTCT
                      ____________________________________________________________
consensus             GAAGCGCCAACTCCTCATCAGCAACTCCTATAAGTCGTTTCGTCTGGGACCGAGATGTCT
 
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rJMSF013M01+          AAGCTCGAAGGGAAGGTGTAACTGCTATATTATGTAACTCTTGTTGTATTGTTGAATGAA
rJMFF019C04+          AAGCTCGAAGGGAAGGTGTAACTGCTATATTATGTAACTCTTGTTGTATTGTTGAATGAA
                      ____________________________________________________________
consensus             AAGCTCGAAGGGAAGGTGTAACTGCTATATTATGTAACTCTTGTTGTATTGTTGAATGAA
 
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rJMSF013M01+          TATTCTTGCAATGCCATCCAGTTGCATTTTTGCACTGTGATGTTTGAACTTTAAATCTGT
rJMFF019C04+          TATTCTTGCAATGCCATCCAGTTGCATTTTTGCACTGTGATGTTTGAACTTTAAATCTGT
                      ____________________________________________________________
consensus             TATTCTTGCAATGCCATCCAGTTGCATTTTTGCACTGTGATGTTTGAACTTTAAATCTGT
 
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rJMSF013M01+          GGTTGTGTATAGGATTCGGTTCCAGTCTGTTTCTCT                        
rJMFF019C04+          GGTTGTGTATAGGATTCGGTTCCAGTCTGTTTCTCTTGTCTGATGAGAGTGGAATAATAA
                      ____________________________________________________________
consensus             GGTTGTGTATAGGATTCGGTTCCAGTCTGTTTCTCTTGTCTGATGAGAGTGGAATAATAA