| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009K17 | Sequence | 551 | 000043 (4) | ref|XP_009616415.1| | 2e-78 | PREDICTED: V-type proton ATPase subunit d2 [Nicotiana tomentosiformis] ref|XP_00 | 721 | 012285 (4) | gb|KDO72501.1| | 1e-99 | hypothetical protein CISIN_1g018459mg [Citrus sinensis] |
| JMFF018F06 | Sequence | 640 | 000043 (4) | ref|XP_009616415.1| | 5e-118 | PREDICTED: V-type proton ATPase subunit d2 [Nicotiana tomentosiformis] ref|XP_00 | 791 | 012285 (4) | gb|KJB33309.1| | 1e-87 | hypothetical protein B456_006G025300 [Gossypium raimondii] |
| JMFF033D11 | Sequence | 435 | 012285 (4) | gb|KDO72501.1| | 2e-60 | hypothetical protein CISIN_1g018459mg [Citrus sinensis] | |||||
| JMSF033J06 | Sequence | 678 | 000043 (4) | ref|XP_009765131.1| | 6e-120 | PREDICTED: V-type proton ATPase subunit d2 [Nicotiana sylvestris] ref|XP_0097651 | 782 | 012285 (4) | gb|KDO72501.1| | 2e-124 | hypothetical protein CISIN_1g018459mg [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF033J06+ GCTCCATATTCTCTGAGTGCATACTTCAGAGGACTTGGATGACATGAATATTGAGA
____________________________________________________________
consensus GCTCCATATTCTCTGAGTGCATACTTCAGAGGACTTGGATGACATGAATATTGAGA
. : . : . : . : . : . :
rJMSF033J06+ TTATGAGGAATACCCTGTACAAGGCATACCNTGAGGATTTTTACAAATTTTGCCAGAAAC
rJMFF009K17+ TACAAATTTTGCCAGAAAC
____________________________________________________________
consensus TTATGAGGAATACCCTGTACAAGGCATACCNTGAGGATTTTTACAAATTTTGCCAGAAAC
. : . : . : . : . : . :
rJMSF033J06+ TGGGTGGTGCTACTGCAGAAATCATGTCAGACTTGCTTTCTTTTGAGGCTGACAGAAGAG
rJMFF009K17+ TGGGTGGTGCTACTGCAGAAATCATGTCAGACTTGCTTTCTTTTGAGGCTGACAGAAGAG
rJMFF018F06+ TGACAGAAGAG
____________________________________________________________
consensus TGGGTGGTGCTACTGCAGAAATCATGTCAGACTTGCTTTCTTTTGAGGCTGACAGAAGAG
. : . : . : . : . : . :
rJMSF033J06+ CTGTTAATATCACCATAAACAGCATTGGCACTGAGCTCACTAGGGAAGACCGCAAGAAGT
rJMFF009K17+ CTGTTAATATCNCCATAAACAGCATTGGCANTGAGCTCACTAGGGAAGACCGCAAGAAGT
rJMFF018F06+ CTGTTAATATCACCATAAACAGCATTGGCACTGAGCTCACTAGGGAAGACCGCAAGAAGT
____________________________________________________________
consensus CTGTTAATATCACCATAAACAGCATTGGCACTGAGCTCACTAGGGAAGACCGCAAGAAGT
. : . : . : . : . : . :
rJMFF033D11+ CTTATGGTCATGAGGAGCTTGCTATCTGCGAAG
rJMSF033J06+ TATATTCTAATTTTGGTCTACTTTATCCTTATGGTCATGAGGAGCTTGCTATCTGCGAAG
rJMFF009K17+ TATATTCTAATTTTGGTCTACTTTATCCTTATGGTCATGAGGAGCTTGCTATCTGNGAAG
rJMFF018F06+ TATATTCTAATTTTGGTCTACTTTATCCTTATGGTCATGAGGAGCTTGCTATCTGCGAAG
____________________________________________________________
consensus TATATTCTAATTTTGGTCTACTTTATCCTTATGGTCATGAGGAGCTTGCTATCTGCGAAG
. : . : . : . : . : . :
rJMFF033D11+ ATATTGATCAGGTTCGTGGTGTCATGGAAAAATACCCTCCATATCAATCCATATTTTCCA
rJMSF033J06+ ATATTGATCAGGTTCGTGGTGTCATGGAAAAATACCCTCCATATCAATCCATATTTTCCA
rJMFF009K17+ ATATTGATCAGGTTCGTGGTGTCATGGAAAAATACCCTCCATATCAATCCATATTTTCCA
rJMFF018F06+ ATATTGATCAGGTTCGTGGTGTCATGGAAAAATACCCTCCATATCAATCCATATTTTCCA
____________________________________________________________
consensus ATATTGATCAGGTTCGTGGTGTCATGGAAAAATACCCTCCATATCAATCCATATTTTCCA
. : . : . : . : . : . :
rJMFF033D11+ AATTATCCTATGGGGAGAGCCAGATTCTTGACAAGGCTTTCTATGAGGAAGAAGTCAAAC
rJMSF033J06+ AATTATCCTATGGGGAGAGCCAGATTCTTGACAAGGCTTTCTATGAGGAAGAAGTCAAAC
rJMFF009K17+ AATTATCCTATGGGGAGAGCCAGATTCTTGACAAGGCTTTCTATGAGGAAGAAGTCAAAC
rJMFF018F06+ AATTATCCTATGGGGAGAGCCAGATTCTTGACAAGGCTTTCTATGAGGAAGAAGTCAAAC
____________________________________________________________
consensus AATTATCCTATGGGGAGAGCCAGATTCTTGACAAGGCTTTCTATGAGGAAGAAGTCAAAC
. : . : . : . : . : . :
rJMFF033D11+ GTCTTTGCTTGGCATTTGAGCAGCAGTTCCNCTATGGCGTATTCTTTGCATATGTAAGGT
rJMSF033J06+ GTCTTTGCTTGGCATTTGAGCAGCAGTTCCACTATGGCGTATTCTTTGCATATGTAAGGT
rJMFF009K17+ GTCTTTGCTTGGCATTNGAGCAGCAGTTCCACTATGGCGTATTCTTTGCATATGTAAGGT
rJMFF018F06+ GTCTTTGCTTGGCATTTGAGCAGCAGTTCCACTATGGCGTATTCTTTGCATATGTAAGGT
____________________________________________________________
consensus GTCTTTGCTTGGCATTTGAGCAGCAGTTCCACTATGGCGTATTCTTTGCATATGTAAGGT
. : . : . : . : . : . :
rJMFF033D11+ TGAGAGAGCAGGAAATCAGGAACNTGATGTGGATATCNGAANGTGTGGCTCAGAACCAAA
rJMSF033J06+ TGAGAGAGCAGGAAATCAGGAACTTGATGTGGATATCTGAATGTGTGGCTCAGAACCAAA
rJMFF009K17+ TGAGAGAGCAGGAAATCAGGAACTTGATGTGGATATCTGAATGTGTGGCTCAGGACCAAA
rJMFF018F06+ TGAGAGAGCAGGAAATCAGGAACTTGATGTGGATATCTGAATGTGTGGCTCAGAACCAAA
____________________________________________________________
consensus TGAGAGAGCAGGAAATCAGGAACTTGATGTGGATATCTGAATGTGTGGCTCAGAACCAAA
. : . : . : . : . : . :
rJMFF033D11+ AATCCAGAGTGCACGACAGTGNTGTTTTCATATTNTAATTTTTCTTAATTTATTAGGAAG
rJMSF033J06+ AATCCAGAGTGCACGACAGTGTTGTTTTCATATTTTAATTTTTCTTAATTTATTAGGAAG
rJMFF009K17+ AATCCAGAGTGCACGNCAGTGTTGTTTTCATATTTTAATTTTTCTTAATTTATTAGGAAG
rJMFF018F06+ AATCCAGAGTGCACGACAGTGTTGTTTTCATATTTTAATTTTTCTTAATTTATTAGGAAG
____________________________________________________________
consensus AATCCAGAGTGCACGACAGTGTTGTTTTCATATTTTAATTTTTCTTAATTTATTAGGAAG
. : . : . : . : . : . :
rJMFF033D11+ TCTGGTATACTTCTCCATAATCTTAAGTTNTTNGGGGANCTATTTNTGGANGTAATNGCC
rJMSF033J06+ TCTGGTATACTTCTCCATAATCTTAAGTTTTTCGGGGAACTATTTCTGGATGTAATTGCC
rJMFF009K17+ TNTGGTATACTTCTCCATAATCTTAAGTTTTTCGGGGAACTATTTCTGGATGTAATTGCC
rJMFF018F06+ TCTGGTATACTTCTCCATAATCTTAAGTTTTTCGGGGAACTATTTCTGGATGTAATTGCC
____________________________________________________________
consensus TCTGGTATACTTCTCCATAATCTTAAGTTTTTCGGGGAACTATTTCTGGATGTAATTGCC
. : . : . : . : . : . :
rJMFF033D11+ GACAGCCCCCNNGATTTTANGTTGCTANGCCTC
rJMSF033J06+ GACAGCCCCCTTGATTTTATGTTGCTATGCCTCTGCCCCTTCTATTCGTTCTGTGTCTTG
rJMFF009K17+ GACAGCCCCCTTGATTTTATGTTGCTATGCCTCTGCCCCTTCTATTCGTTCTGTGTCTTG
rJMFF018F06+ GACAGCCCCCTTGATTTTATGTTGCTATGCCTCTGCCCCTTCTATTCGTTCTGTGTCTTG
____________________________________________________________
consensus GACAGCCCCCTTGATTTTATGTTGCTATGCCTCTGCCCCTTCTATTCGTTCTGTGTCTTG
. : . : . : . : . : . :
rJMSF033J06+ GAGGCTGATTGGCCGATGACAATAAGTTGGAAAGATACATTGTTCCGCCCTTAAAGCATT
rJMFF009K17+ GAGGCTGATTGGCCGATGACAATAAGTTGGAAAGATCCATTGTTCCGCCCTTNAAGCATT
rJMFF018F06+ GAGGCTGATTGGCCGATGACAATAAGTTGGAAAGATACATTGTTCCGCCCTTAAAGCATT
____________________________________________________________
consensus GAGGCTGATTGGCCGATGACAATAAGTTGGAAAGATACATTGTTCCGCCCTTAAAGCATT
. : . : . : . : . : . :
rJMSF033J06+ TGCTGC
rJMFF009K17+ NGCTGCTTAATAAGTCAATGTATGTAAGGT
rJMFF018F06+ TGCTGCTTAATAAGTCAATGTATGTAAGGTTGAACTCGAGTCAGGTTTGATTTCATTATT
____________________________________________________________
consensus TGCTGCTTAATAAGTCAATGTATGTAAGGTTGAACTCGAGTCAGGTTTGATTTCATTATT
. : . : . : . : . : . :
rJMFF018F06+ TGTATCTCAATTTGTTATTATTATGGAGTAAGTTGTTCTAGAGCGTAATGTATGTATTGT
____________________________________________________________
consensus TGTATCTCAATTTGTTATTATTATGGAGTAAGTTGTTCTAGAGCGTAATGTATGTATTGT
. : . : . : . : . : . :
rJMFF018F06+ TACAGCTAGCTTGCCTTGTTGGCCACTGAAACGCTACCACCTTCATTTCTATAAAGAATT
____________________________________________________________
consensus TACAGCTAGCTTGCCTTGTTGGCCACTGAAACGCTACCACCTTCATTTCTATAAAGAATT