Contig 012277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017A10Sequence124012277 (6)ref|XP_009802815.1|5e-16PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]627012277 (6)ref|XP_009802815.1|1e-72PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]
JMSF031E14Sequence668012277 (6)gb|EYU39982.1|3e-76hypothetical protein MIMGU_mgv1a009538mg [Erythranthe guttata]691012277 (6)ref|XP_009802815.1|2e-99PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]
JMSF052H23Sequence611012277 (6)gb|EYU39982.1|1e-91hypothetical protein MIMGU_mgv1a009538mg [Erythranthe guttata]901012277 (6)ref|XP_009802815.1|5e-131PREDICTED: F-box/kelch-repeat protein At1g15670-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF052H23-                                                            AACACTTTTTC
JMSF031E14-                                                         GGCAACACTTTTTC
                      ____________________________________________________________
consensus                                                           GGCAACACTTTTTC
 
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JMSF052H23-           ATAGATAAGATCATAAGAAGAGTTTCTGGAAACAAAAGGTCGAGTTATGGACTCAGCGGA
JMSF031E14-           ATAGATAAGATCATAAGAAGAGTTTCTGGAAACAAAAGGTCGAGTTATGGACTCAGCGGA
                      ____________________________________________________________
consensus             ATAGATAAGATCATAAGAAGAGTTTCTGGAAACAAAAGGTCGAGTTATGGACTCAGCGGA
 
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JMSF052H23-           ATTCTCCGAGTTGATCCCGGGTTTGCCTGAGGAACTCGCTCTAGAGTGCCTCACTCGGTT
JMSF031E14-           ATTCTCCGAGTTGATCCCGGGTTTGCCTGAGGAACTCGCTCTAGAGTGCCTCACTCGGTT
                      ____________________________________________________________
consensus             ATTCTCCGAGTTGATCCCGGGTTTGCCTGAGGAACTCGCTCTAGAGTGCCTCACTCGGTT
 
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JMSF052H23-           GCACTACTCGGCTCACTCGGTCTCATCCCACGTATGCAGACGCTGGCGCGAGCTTCTTCA
JMSF031E14-           GCACTACTCGGCTCACTCGGTCTCATCCCACGTATGCAGACGCTGGCGCGAGCTTCTTCA
                      ____________________________________________________________
consensus             GCACTACTCGGCTCACTCGGTCTCATCCCACGTATGCAGACGCTGGCGCGAGCTTCTTCA
 
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JMSF052H23-           GAGCAAGGACTTCTACTATCACCGTAGACAAACGGGTTTCA-CCCATAAGGCGGCTTGTT
JMSF031E14-           GAGCAAGGACTTCTACTATCACCGTAGACAAACGGGTTTCA-CCCATAAGGCGGCTTGTT
rJMSF052H23+                           ATCACCGTAGACAAACGGGTTTCACCCCATAAGGCGGCTTGTT
                      ____________________________________________________________
consensus             GAGCAAGGACTTCTACTATCACCGTAGACAAACGGGTTTCA-CCCATAAGGCGGCTTGTT
 
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JMSF052H23-           TGATCCAGGCGCTTCC--GGTTCCGGCCGATTCGAAGCCGGTTGGGCAACCGAGTTACGG
JMSF031E14-           TGATCCAGGCGCTTCC--GGTTCCGGCCGATTCGAAGCCGGTTGGGCAACCGAGTTACGG
rJMSF052H23+          TGATCCAGGCGCTTCCCGGTTNCCGGCCGATTCGAAGCCGGTTGGGCAACCGAGTTACGG
                      ____________________________________________________________
consensus             TGATCCAGGCGCTTCC--GGTTCCGGCCGATTCGAAGCCGGTTGGGCAACCGAGTTACGG
 
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JMSF052H23-           AATTTCATTGTTTGATCCGGCGAGTGGGGATTGGGATCGGGTTGCTCCGATTCCGAAGTA
JMSF031E14-           AATTTCATTGTTTGATCCGGCGAGTGGGGATTGGGATCGGGTTGCTCCGATTCCGAAGTA
rJMSF031E14+                                                          GATTCCGAAGTA
JMFF017A10-                                    GGGGATTGGGATCGGGTTGCTCCGATTCCNAANTA
rJMSF052H23+          AATTTCATTGTTTGATCCGGCGAGTGGGGATTGGGATCGGGTTGCTCCGATTCCGAAGTA
                      ____________________________________________________________
consensus             AATTTCATTGTTTGATCCGGCGAGTGGGGATTGGGATCGGGTTGCTCCGATTCCGAAGTA
 
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JMSF052H23-           CCCTAACGGGTTGCCGC-TTTTCTGTCAAATCGCGAGTACTGAAGGGAAGCTCATTGTGA
JMSF031E14-           CCCTAACGGGTTGCCGCTTTTTCTGTCAAATCGCGAGTACTGAAGGGAAGCTCATTGTGA
rJMSF031E14+          CCCTAACGGGTTGCCGCTTTTTCTGTCAAATCGCGAGTACTGAAGGGAAGCTCATTGTGA
JMFF017A10-           CCCTAACGGGTTGCCGC-TTTTCTGTCAAATCNCGAGTACTGAAGGGAAGCTCATTGTGA
rJMSF052H23+          CCCTAACGGGTTGCCGC-TTTTCTGTCAAATCGCGAGTACTGAAGGGAAGCTCATTGTGA
                      ____________________________________________________________
consensus             CCCTAACGGGTTGCCGC-TTTTCTGTCAAATCGCGAGTACTGAAGGGAAGCTCATTGTGA
 
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JMSF052H23-           TGGGCGGGTGGGACCCGGCGACGTGGGATCCGATTAGGGACGTGTTTATGTACGAGTTCA
JMSF031E14-           TGGGCGGGTGGGACCCGGCGACGTGGGATCCGATTAGGGACGTGTTTATGTACGAGTTCA
rJMSF031E14+          TGGGCGGGTGGGACCCGGCGACGTGGGATCCGATTAGGGACGTGTTTATGTACGAGTTCA
JMFF017A10-           TGGGCGGGTGGGACCCGGCGACGTGGGATC                              
rJMSF052H23+          TGGGCGGGTGGGACCCGGCGACGTGGGATCCGATTAGGGACGTGTTTATGTACGAGTTCA
                      ____________________________________________________________
consensus             TGGGCGGGTGGGACCCGGCGACGTGGGATCCGATTAGGGACGTGTTTATGTACGAGTTCA
 
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JMSF052H23-           CGACCGGGAAGTGGACTCAGTGCGAGGACATGCCGTGTAGACGCTCCTTCTTCGCGATGG
JMSF031E14-           CGACCGGGAAGTGGACTCAGTGCGAGGACATGCCGTGTAGACGCTCCTTCTTCGCGATGG
rJMSF031E14+          CGACCGGGAAGTGGACTCAGTGCGAGGACATGCCGTGTAGACGCTCCTTCTTCGCGATGG
rJMSF052H23+          CGACCGGGAAGTGGACTCAGTGCGAGGACATGCCGTGTAGACGCTCCTTCTTCGCGATGG
rJMFF017A10+                                           CGTGTAGACGCTCCTTCTTCGCGATGG
                      ____________________________________________________________
consensus             CGACCGGGAAGTGGACTCAGTGCGAGGACATGCCGTGTAGACGCTCCTTCTTCGCGATGG
 
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JMSF052H23-           GCGCCGCCGGCGGGCGGGTGTTCGTGGCCGGCGGGCACGACGAGAACAAGAACGCGCTGC
JMSF031E14-           GCGCCGCCGGCGGGCGGGTGTTCGTGGCCGGCGGGCACGACGAGAACAAGAACGCGCTGC
rJMSF031E14+          GCGCCGCCGGCGGGCGGGTGTTCGTGGCCGGCGGGCACGACGAGAACAAGAACGCGCTGC
rJMSF052H23+          GCGCCGCCGGCGGGCGGGTGTTCGTGGCCGGCGGGCACGACGAGAACAAGAACGCGCTGC
rJMFF017A10+          GCNCCGCCGNCGGGCGGNTGTTCGCGGCCGNNGGGCACGACGTGAACAAGAACGCGCTGC
                      ____________________________________________________________
consensus             GCGCCGCCGGCGGGCGGGTGTTCGTGGCCGGCGGGCACGACGAGAACAAGAACGCGCTGC
 
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JMSF052H23-           GCA                                                         
JMSF031E14-           GCAGCGCGTGGGCGTTCGACACACGGGAGAACCACTGGAGCGAGTTGCCCGGAATGA   
rJMSF031E14+          GCAGCGCGTGGGCGTTCGACACACGGGAGAACCACTGGAGCGAGTTGCCCGGAATGAGTG
rJMSF052H23+          GCAGCGCGTGGGCGTTCGACACACGGGAGAACCACTGGAGCGAGTTGCCCGGAATGAGTG
rJMFF017A10+          GCAGCGCGTGGGCGTTCGACACACGGGAGAACCNCTGGAGCGAGTTGCCCGGAATGAGTG
                      ____________________________________________________________
consensus             GCAGCGCGTGGGCGTTCGACACACGGGAGAACCACTGGAGCGAGTTGCCCGGAATGAGTG
 
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rJMSF031E14+          AGGCGCGTGACGAGTGCGAGGGGATCGTGGTGGGGCCCGAGTTCTGGGTGGTGAGCGGTT
rJMSF052H23+          AGGCGCGTGACGAGTGCGAGGGGATCGTGGTGGGGCCCGAGTTCTGGGTGGTGAGCGGTT
rJMFF017A10+          AGGCGCGTGACGAGTGCGAGGGGATCGTGGTGGGGCCCGAGTTNTGGGTGGTGAGCGGTT
                      ____________________________________________________________
consensus             AGGCGCGTGACGAGTGCGAGGGGATCGTGGTGGGGCCCGAGTTCTGGGTGGTGAGCGGTT
 
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rJMSF031E14+          ACGACACCGAAACCCAAGGGCGGTTCAAGAGCAGCGCCGAGGCGCTGCAAATGGAAACGG
rJMSF052H23+          ACGACACCGAAACCCAAGGGCGGTTCAAGAGCAGCGCCGAGGCGCTGCAAATGGAAACGG
rJMFF017A10+          ACGACACCGAAACCCAAGGGCGGTTCAAGAGCAGCGCCGAGGCGCTGCAAATGGAAACGG
                      ____________________________________________________________
consensus             ACGACACCGAAACCCAAGGGCGGTTCAAGAGCAGCGCCGAGGCGCTGCAAATGGAAACGG
 
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rJMSF031E14+          GCGAGTGGAGGCGCGTGGAAAACTCGTGGGCGTCGAGTCAGTCCCCGAGGGGGTGTGTGT
rJMSF052H23+          GCGAGTGGAGGCGCGTGGAAAACTCGTGGGCGTCGAGTCAGTCCCCTAGGGGGTGTGTGT
rJMFF017A10+          GCGAGTGGAGGCGCGTGGAAAACTCGTGGGCGTCGAGTCAGTCCCCGAGGGGGTGTGTGT
                      ____________________________________________________________
consensus             GCGAGTGGAGGCGCGTGGAAAACTCGTGGGCGTCGAGTCAGTCCCCGAGGGGGTGTGTGT
 
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rJMSF031E14+          GGGAGGGCAAAAACGGAAACCTTAGAAGCTGGACTGAGTGTGACCCGGCAGTGAAATTCG
rJMSF052H23+          GGGAGGGCAAAAACGGAAACCTTAGAAGCTGGACTGAGTGTGACCCGGCAGTGAAATTCG
rJMFF017A10+          GGGAGGGCAAAAACGGAAACCTTAGAAGCTGGACTGAGTGTGACCCGGCAGTGAAATTCG
                      ____________________________________________________________
consensus             GGGAGGGCAAAAACGGAAACCTTAGAAGCTGGACTGAGTGTGACCCGGCAGTGAAATTCG
 
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rJMSF031E14+          GGTCATGTGGAATTGACCTGGGCGAACATTGCATATTGACCGGGTCATCTTACCAGGGGG
rJMSF052H23+          GGTCATGTGGAATTGACCTGGGCGAACATTGCATATTGACCGGGTCATCTTACCAGGGGG
rJMFF017A10+          GGTCATGTGGAATTGACCTGGGCGAACATTGCATATTGACCGGGTCATCTTACCAGGGGG
                      ____________________________________________________________
consensus             GGTCATGTGGAATTGACCTGGGCGAACATTGCATATTGACCGGGTCATCTTACCAGGGGG
 
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rJMSF031E14+          CCCCACATGCTTTCTTCTTCATCGAACCACAAAATCTTAAATTGGTTAAGACAGAC-GTC
rJMSF052H23+          CCCCACATGCTTTCTTCTTCATCGAACCACAAAATCTTAAATTGGTTAAGACAGAC-GTC
rJMFF017A10+          CCCCACATGCTTTCTTCTTCATCGAACCACAAAATCTTAAATTGGTTAAGACAGACTGTC
                      ____________________________________________________________
consensus             CCCCACATGCTTTCTTCTTCATCGAACCACAAAATCTTAAATTGGTTAAGACAGAC-GTC
 
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rJMSF031E14+          CCTGACGAGTTTGCGGGAAT                                        
rJMSF052H23+          CCTGACGAGTTTGCGGGAATTGTGCAATCCGGATGCTGTGTGGAAATATGAATTATCCAT
rJMFF017A10+          CCTGACGAGTTTGCGGGAATTGTGCAATCCGGATGCTGTGTGGAAATATGAATTATCCAT
                      ____________________________________________________________
consensus             CCTGACGAGTTTGCGGGAATTGTGCAATCCGGATGCTGTGTGGAAATATGAATTATCCAT
 
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rJMSF052H23+          TCCAAATAATTATACCATAT                                        
rJMFF017A10+          TCCAAATAATTATACCATATTTGTTAATACTATATGAGTTTCATCCTTATCCATTTTCCG
                      ____________________________________________________________
consensus             TCCAAATAATTATACCATATTTGTTAATACTATATGAGTTTCATCCTTATCCATTTTCCG