Contig 012276:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006G21Sequence516012276 (6)ref|XP_011097933.1|1e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]632012276 (6)ref|XP_011097933.1|5e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]
JMFF016N12Sequence516012276 (6)ref|XP_011097933.1|1e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]620012276 (6)ref|XP_011097933.1|4e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]
JMFN029D17Sequence629012276 (6)ref|XP_011097933.1|4e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]
JMFN030H10Sequence526012276 (6)ref|XP_011097933.1|7e-69PREDICTED: probable histone H2A.3 [Sesamum indicum]

Alignment

This contig is upended


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JMFN030H10+                                                                  AAAAT
                      ____________________________________________________________
consensus                                                                    AAAAT
 
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JMFN030H10+           CAAATAAACACCTCCTCCCCACCCAAACAAGACAAAAATCTGGCCTCGATCCATCTAATC
JMFF016N12+                                  CAAACAAGACAAAAATCCGGCCTCGATCCATCTAATC
JMFF006G21+                                  CAAACAAGACAAAAATCCGGCCTCGATCCATCTAATC
                      ____________________________________________________________
consensus             CAAATAAACACCTCCTCCCCACCCAAACAAGACAAAAATCCGGCCTCGATCCATCTAATC
 
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JMFN030H10+           CTCATCAACGGGCTTTGAGGAGCCACCAGTCTTCTTCGGGAGCAAGAGATTGTGAATGTT
JMFF016N12+           CTCATCAACGGGCTTTGAGGAGCCACCAGTCTTCTTCGGGAGCAAGAGATTGTGAATGTT
rJMFF006G21-                                        CTTCTTCGGGAGCAAGAGATTGTGAATGTT
JMFN029D17+                                                            TTGTGAATGTT
JMFF006G21+           CTCATCAACGGGCTTTGAGGAGCCACCAGTCTTCTTCGGGAGCAAGAGATTGTGAATGTT
rJMFF016N12-                                        CTTCTTCGGGAGCAAGAGATTGTGAATGTT
                      ____________________________________________________________
consensus             CTCATCAACGGGCTTTGAGGAGCCACCAGTCTTCTTCGGGAGCAAGAGATTGTGAATGTT
 
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JMFN030H10+           CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
JMFF016N12+           CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
rJMFF006G21-          CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
JMFN029D17+           CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
JMFF006G21+           CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
rJMFF016N12-          CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
                      ____________________________________________________________
consensus             CGGCATCACACCACCATTGGCAATAGTCACATCTCCAAGAAGCTTGCTCAGCTCCTCATC
 
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JMFN030H10+           GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
JMFF016N12+           GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
rJMFF006G21-          GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
JMFN029D17+           GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
JMFF006G21+           GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
rJMFF016N12-          GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
                      ____________________________________________________________
consensus             GTTCCTCACAGCCAATTGGATGTGCCTCGGCACGATCCTAGTCTTCTTGTTGTCCCTCGC
 
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JMFN030H10+           AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
JMFF016N12+           AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
rJMFF006G21-          AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
JMFN029D17+           AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
JMFF006G21+           AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
rJMFF016N12-          AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
                      ____________________________________________________________
consensus             AGCATTTCCAGCCAATTCAAGCACCTCAGCGGCAAGGTATTCGAGGACGGCGGCGAGATA
 
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JMFN030H10+           GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
JMFF016N12+           GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
rJMFF006G21-          GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
JMFN029D17+           GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
JMFF006G21+           GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
rJMFF016N12-          GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
                      ____________________________________________________________
consensus             GACGGGAGCTCCGGCACCGACACGCTCGGCGTACTTGCCGGCCTTGAGGAAACGGGCGAT
 
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JMFN030H10+           ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTGTTGGCAGG
JMFF016N12+           ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
rJMFF006G21-          ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
JMFN029D17+           ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
JMFF006G21+           ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
rJMFF016N12-          ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
                      ____________________________________________________________
consensus             ACGGCCGACGGGGAACTGGAGACCGGCCTTGCTGCTACGAGACTGAGCCTTCTTGGCAGG
 
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JMFN030H10+           ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
JMFF016N12+           ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
rJMFF006G21-          ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
JMFN029D17+           ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
JMFF006G21+           ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
rJMFF016N12-          ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
                      ____________________________________________________________
consensus             ACCGGAACCAAGGGTTTTGCCACGACCCGCCATTGCTGTTTTAGTATTACGACTGAAGAA
 
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JMFN030H10+           GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGT                     
JMFF016N12+           GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGTTAACAAAATACTG        
rJMFF006G21-          GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGTTAACAAAATACTG        
JMFN029D17+           GGGGTACAAAAGAGGGATTCGCTGTGAAATT                             
JMFF006G21+           GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGTTAACAAAATACTG        
rJMFF016N12-          GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGTTAACAAAATACTGGTTACTTT
                      ____________________________________________________________
consensus             GGGGTACAAAAGAGGGATTCGCTGTGAAATTCAAGCGGTTAACAAAATACTGGTTACTTT