Contig 012274:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015D17Sequence567005002 (6)emb|CDP06456.1|2e-73unnamed protein product [Coffea canephora]513012274 (5)gb|KJB36954.1|3e-78hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFF015D22Sequence561005002 (6)emb|CDP06456.1|2e-73unnamed protein product [Coffea canephora]704012274 (5)gb|KJB36954.1|2e-125hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFF016A21Sequence571005002 (6)emb|CDP06456.1|2e-67unnamed protein product [Coffea canephora]701012274 (5)gb|KJB36954.1|9e-105hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFN016J11Sequence599012274 (5)gb|KDO56720.1|1e-131hypothetical protein CISIN_1g044559mg [Citrus sinensis]
JMSF011E09Sequence468005002 (6)emb|CDP06456.1|2e-47unnamed protein product [Coffea canephora]791012274 (5)gb|KJB36954.1|9e-141hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011E09+ AAAGAGA
                      ____________________________________________________________
consensus AAAGAGA
 
. : . : . : . : . : . :
rJMSF011E09+ CTTAAGCACAACCAAANCAGCTTATGAGAATTACTCTAGGATTTTTGTCCCCTGAAGGCC
                      ____________________________________________________________
consensus CTTAAGCACAACCAAANCAGCTTATGAGAATTACTCTAGGATTTTTGTCCCCTGAAGGCC
 
. : . : . : . : . : . :
JMFN016J11- TCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
rJMSF011E09+ AACCACTCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
rJMFF015D22+ ACATCC
                      ____________________________________________________________
consensus AACCACTCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
 
. : . : . : . : . : . :
JMFN016J11- AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
rJMSF011E09+ AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
rJMFF015D22+ AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
                      ____________________________________________________________
consensus AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
 
. : . : . : . : . : . :
JMFN016J11- GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMSF011E09+ GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMFF015D22+ GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMFF016A21+ TCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
                      ____________________________________________________________
consensus GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
 
. : . : . : . : . : . :
JMFN016J11- TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMSF011E09+ TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMFF015D22+ TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMFF016A21+ TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
                      ____________________________________________________________
consensus TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
 
. : . : . : . : . : . :
JMFN016J11- TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMSF011E09+ TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF015D22+ TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF015D17+ CATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF016A21+ TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
                      ____________________________________________________________
consensus TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
 
. : . : . : . : . : . :
JMFN016J11- GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMSF011E09+ GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF015D22+ GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF015D17+ GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF016A21+ GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
                      ____________________________________________________________
consensus GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
 
. : . : . : . : . : . :
JMFN016J11- AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMSF011E09+ AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF015D22+ AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF015D17+ AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF016A21+ AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
                      ____________________________________________________________
consensus AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
 
. : . : . : . : . : . :
JMFN016J11- CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMSF011E09+ CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF015D22+ CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF015D17+ CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF016A21+ CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
                      ____________________________________________________________
consensus CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
 
. : . : . : . : . : . :
JMFN016J11- TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMSF011E09+ TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF015D22+ TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF015D17+ TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF016A21+ TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
                      ____________________________________________________________
consensus TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
 
. : . : . : . : . : . :
JMFN016J11- TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMSF011E09+ TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF015D22+ TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF015D17+ TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF016A21+ TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
                      ____________________________________________________________
consensus TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
 
. : . : . : . : . : . :
JMFN016J11- CTAAC
rJMSF011E09+ CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF015D22+ CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF015D17+ CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF016A21+ CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
                      ____________________________________________________________
consensus CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
 
. : . : . : . : . : . :
rJMSF011E09+ AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF015D22+ AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF015D17+ AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF016A21+ AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
                      ____________________________________________________________
consensus AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
 
. : . : . : . : . : . :
rJMSF011E09+ AGTG
rJMFF015D22+ AGTGTAATCATTGAACTATTGCTCATC
rJMFF015D17+ AGTGTAATCATTGAACTATTGCTCATC
rJMFF016A21+ AGTGTAATCATTGAACTATTGCTCATCTGTATATCGGAATTTTTTTTACCATTCCTGTTT
                      ____________________________________________________________
consensus AGTGTAATCATTGAACTATTGCTCATCTGTATATCGGAATTTTTTTTACCATTCCTGTTT
 
. : . : . : . : . : . :
rJMFF016A21+ TTCAAAATTCTCCGCCCACCGGCATCGGCCCTTTCATATTTTTAATGATGCGTCGTAATC
                      ____________________________________________________________
consensus TTCAAAATTCTCCGCCCACCGGCATCGGCCCTTTCATATTTTTAATGATGCGTCGTAATC