Contig 012274:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015D17Sequence567005002 (6)emb|CDP06456.1|2e-73unnamed protein product [Coffea canephora]513012274 (5)gb|KJB36954.1|3e-78hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFF015D22Sequence561005002 (6)emb|CDP06456.1|2e-73unnamed protein product [Coffea canephora]704012274 (5)gb|KJB36954.1|2e-125hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFF016A21Sequence571005002 (6)emb|CDP06456.1|2e-67unnamed protein product [Coffea canephora]701012274 (5)gb|KJB36954.1|9e-105hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth
JMFN016J11Sequence599012274 (5)gb|KDO56720.1|1e-131hypothetical protein CISIN_1g044559mg [Citrus sinensis]
JMSF011E09Sequence468005002 (6)emb|CDP06456.1|2e-47unnamed protein product [Coffea canephora]791012274 (5)gb|KJB36954.1|9e-141hypothetical protein B456_006G184000 [Gossypium raimondii] gb|KJB36956.1| hypoth

Alignment

This contig is upended


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rJMSF011E09+                                                               AAAGAGA
                      ____________________________________________________________
consensus                                                                  AAAGAGA
 
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rJMSF011E09+          CTTAAGCACAACCAAANCAGCTTATGAGAATTACTCTAGGATTTTTGTCCCCTGAAGGCC
                      ____________________________________________________________
consensus             CTTAAGCACAACCAAANCAGCTTATGAGAATTACTCTAGGATTTTTGTCCCCTGAAGGCC
 
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JMFN016J11-                 TCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
rJMSF011E09+          AACCACTCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
rJMFF015D22+                                                                ACATCC
                      ____________________________________________________________
consensus             AACCACTCAAGTGTGAGCCGAAGGAGCCATTAAGGGTCAATGTTCTTTTCCAGCACATCC
 
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JMFN016J11-           AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
rJMSF011E09+          AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
rJMFF015D22+          AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
                      ____________________________________________________________
consensus             AGAAAATGTTGTCAGGTGAAACAGCTGTTATTGCTGAGACAGGGGACTCATGGTTCAATT
 
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JMFN016J11-           GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMSF011E09+          GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMFF015D22+          GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
rJMFF016A21+                             TCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
                      ____________________________________________________________
consensus             GTCAAAAGTTGAAATTACCTCAAGGATGTGGATACGAGTTCCAAATGCAGTATGGATCTA
 
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JMFN016J11-           TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMSF011E09+          TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMFF015D22+          TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
rJMFF016A21+          TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
                      ____________________________________________________________
consensus             TTGGATGGTCTGTAGGTGCAACTCTTGGGTATGCACAAGCTACACCGGAGAAGCGGGTGA
 
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JMFN016J11-           TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMSF011E09+          TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF015D22+          TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF015D17+                 CATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
rJMFF016A21+          TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
                      ____________________________________________________________
consensus             TTTCTTGCATTGGAGATGGTAGCTTTCAGGTGACAGCTCAGGATGTGTCAACAATGCTGC
 
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JMFN016J11-           GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMSF011E09+          GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF015D22+          GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF015D17+          GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
rJMFF016A21+          GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
                      ____________________________________________________________
consensus             GTTGCGGTCAGAGACCCATCATTTTCCTGATAAACAATGGTGGCTACACAATTGAAGTAG
 
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JMFN016J11-           AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMSF011E09+          AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF015D22+          AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF015D17+          AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
rJMFF016A21+          AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
                      ____________________________________________________________
consensus             AGATCCATGATGGACCTTACAATGTCATCAAGAACTGGAACTACACTGCATTCATGGATG
 
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JMFN016J11-           CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMSF011E09+          CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF015D22+          CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF015D17+          CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
rJMFF016A21+          CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
                      ____________________________________________________________
consensus             CAATCCACAATGGTGAGGGCAAGTGCTGGACAGCCAAGGTATTTTATGAAGAGGAGCTTG
 
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JMFN016J11-           TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMSF011E09+          TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF015D22+          TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF015D17+          TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
rJMFF016A21+          TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
                      ____________________________________________________________
consensus             TTGAAGCAATTGAGACTGCAACCGGAGCCAAGAAGGATTGTCTGTGCTTTATTGAAGTGA
 
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JMFN016J11-           TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMSF011E09+          TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF015D22+          TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF015D17+          TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
rJMFF016A21+          TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
                      ____________________________________________________________
consensus             TTGTTCACAAGGATGATACGAGCAAAGAGCTGCTTGAATGGGGTTCTAGGGTCTCTGCAG
 
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JMFN016J11-           CTAAC                                                       
rJMSF011E09+          CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF015D22+          CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF015D17+          CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
rJMFF016A21+          CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
                      ____________________________________________________________
consensus             CTAACAGCAGGCCTCCAAACCCTCAGTAAACTGTGAAGTGTCGTTGAGGGAGGAAATAAC
 
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rJMSF011E09+          AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF015D22+          AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF015D17+          AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
rJMFF016A21+          AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
                      ____________________________________________________________
consensus             AAAGGGGGATTGGCTTGTCTACCTTGAACAACTTTCAAGTTTCCTACTCTTACTTACGAG
 
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rJMSF011E09+          AGTG                                                        
rJMFF015D22+          AGTGTAATCATTGAACTATTGCTCATC                                 
rJMFF015D17+          AGTGTAATCATTGAACTATTGCTCATC                                 
rJMFF016A21+          AGTGTAATCATTGAACTATTGCTCATCTGTATATCGGAATTTTTTTTACCATTCCTGTTT
                      ____________________________________________________________
consensus             AGTGTAATCATTGAACTATTGCTCATCTGTATATCGGAATTTTTTTTACCATTCCTGTTT
 
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rJMFF016A21+          TTCAAAATTCTCCGCCCACCGGCATCGGCCCTTTCATATTTTTAATGATGCGTCGTAATC
                      ____________________________________________________________
consensus             TTCAAAATTCTCCGCCCACCGGCATCGGCCCTTTCATATTTTTAATGATGCGTCGTAATC