| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014J23 | Sequence | 552 | 007588 (5) | ref|XP_009765456.1| | 5e-20 | PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris] | 789 | 012270 (4) | ref|XP_009612696.1| | 6e-118 | PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo |
| JMSF003D06 | Sequence | 332 | 007588 (5) | ref|XP_009765457.1| | 5e-09 | PREDICTED: putative ion channel POLLUX-like 2 isoform X2 [Nicotiana sylvestris] | 756 | 012270 (4) | ref|XP_009612696.1| | 8e-128 | PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo |
| JMSF012N16 | Sequence | 491 | 007588 (5) | ref|XP_009765456.1| | 4e-12 | PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris] | 742 | 012270 (4) | ref|XP_009612696.1| | 2e-126 | PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo |
| JMSF042D06 | Sequence | 822 | 007588 (5) | ref|XP_009765456.1| | 2e-61 | PREDICTED: putative ion channel POLLUX-like 2 isoform X1 [Nicotiana sylvestris] | 696 | 012270 (4) | ref|XP_009612696.1| | 1e-110 | PREDICTED: putative ion channel POLLUX-like 2 isoform X3 [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
rJMSF012N16+ TGGATGA
rJMSF003D06+ TTCCCTTGGATGA
rJMFF014J23+ TGGATGA
____________________________________________________________
consensus TTCCCTTGGATGA
. : . : . : . : . : . :
rJMSF012N16+ CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
rJMSF003D06+ CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
rJMFF014J23+ CAGAAATAAAGCTAGCAGACTTACTGGTCCATGGGAAGCTAAGGAATGTGCAAATTTCTC
____________________________________________________________
consensus CAGAAATAAAGCTAGCAGACTTACTGGT-CATGGGAAGCTAAGGAATGTGCAAATTTCTC
. : . : . : . : . : . :
rJMSF012N16+ ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMSF003D06+ ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMSF042D06+ TTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
rJMFF014J23+ ACAGGATTGGAAACCCGATGGTCTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
____________________________________________________________
consensus ACAGGATTGGAAACCCGATGGACTATGACACTCTGAACGACACAATTGTAAGCATTCAAA
. : . : . : . : . : . :
rJMSF012N16+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMSF003D06+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMSF042D06+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
rJMFF014J23+ AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
____________________________________________________________
consensus AATCTTTAAAGAAAGATGAAGATATTACATTCTCCATTGTTGTGATATCTGATCGAGAAT
. : . : . : . : . : . :
rJMSF012N16+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMSF003D06+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMSF042D06+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
rJMFF014J23+ GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
____________________________________________________________
consensus GGCTCCTTGGAGATCCATCCAAGGGAGACAAGCAATCTGCATACTCTCTTCTCCTTGCTG
. : . : . : . : . : . :
rJMSF012N16+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMSF003D06+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMSF042D06+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
rJMFF014J23+ AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
____________________________________________________________
consensus AAAACATTTGCAATAAACTTGGGGTGAAGGTGCAAAACCTAGTTGCAGAAATTGTTGATT
. : . : . : . : . : . :
rJMSF012N16+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMSF003D06+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMSF042D06+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
rJMFF014J23+ CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
____________________________________________________________
consensus CCAAGTTTGGGAAACAGATTACAAGAATCAGGCCGTCCTTAACTTACATTGCGGCGGAGG
. : . : . : . : . : . :
rJMSF012N16+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMSF003D06+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMSF042D06+ AAGTAATGAACCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
rJMFF014J23+ AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
____________________________________________________________
consensus AAGTAATGAGCCTCGTGACAGCTCAAGTTGCAGAAAACTGTGAGTTGGATGAGGTCTGGA
. : . : . : . : . : . :
rJMSF012N16+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMSF003D06+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMSF042D06+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
rJMFF014J23+ AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
____________________________________________________________
consensus AAGACATTTTAGATGCCGATGGGGATGAAATATACATTAAGGATATCCGCCTCTACATGA
. : . : . : . : . : . :
rJMSF012N16+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMSF003D06+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMSF042D06+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
rJMFF014J23+ AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
____________________________________________________________
consensus AGGAAGGGGAGAATCCTTCATTTGCCGAGCTCAGTGAAAGAGCATATTTGCGAAGAGAAG
. : . : . : . : . : . :
rJMSF012N16+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMSF003D06+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMSF042D06+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
rJMFF014J23+ TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
____________________________________________________________
consensus TTGCCATTGGTTATGTCAAGAACAACAAAAACGTTCTGAACCCAATTCCCAAGTCAGAGC
. : . : . : . : . : . :
rJMSF012N16+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMSF003D06+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMSF042D06+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
rJMFF014J23+ CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
____________________________________________________________
consensus CCCTTAATCTTCAACTTGGTGACTCCCTGATAGTCATATCTGAGCTTGAAGGAGAACAGC
. : . : . : . : . : . :
rJMSF012N16+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMSF003D06+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMSF042D06+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
rJMFF014J23+ CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
____________________________________________________________
consensus CTGTGGTCATTGAAGCAGAGTCTTAAAGTTTTAAACAACTTCACATAGATTCATGTAATC
. : . : . : . : . : . :
rJMSF012N16+ CCAGGAAAC
rJMSF003D06+ CCAGGAAACTGCCCTTGTT
rJMSF042D06+ CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTT
rJMFF014J23+ CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTTTATTGATTATTTTCCCCT
____________________________________________________________
consensus CCAGGAAACTGCCCTTGTTTCTTGAATTATTCTCATCCATTTTATTGATTATTTTCCCCT