| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012O24 | Sequence | 555 | 008758 (8) | ref|XP_009625365.1| | 1e-07 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Nicotiana tomentosiform | 745 | 012261 (4) | ref|XP_004232673.1| | 9e-106 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Solanum lycopersicum] |
| JMFF013B15 | Sequence | 554 | 008758 (8) | ref|XP_009625365.1| | 1e-07 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Nicotiana tomentosiform | 696 | 012261 (4) | ref|XP_004145628.1| | 1e-94 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Cucumis sativus] gb|KGN |
| JMFF016D16 | Sequence | 511 | 008758 (8) | ref|XP_009625365.1| | 8e-08 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Nicotiana tomentosiform | 651 | 012261 (4) | gb|KDO36143.1| | 1e-75 | hypothetical protein CISIN_1g037139mg, partial [Citrus sinensis] |
| JMSF034J01 | Sequence | 635 | 008758 (8) | ref|XP_009625365.1| | 1e-07 | PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Nicotiana tomentosiform | 633 | 012261 (4) | gb|KDO36143.1| | 5e-79 | hypothetical protein CISIN_1g037139mg, partial [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMFF012O24+ TGCAGAAATTACTGGATGAGCTTGGTG
____________________________________________________________
consensus TGCAGAAATTACTGGATGAGCTTGGTG
. : . : . : . : . : . :
rJMFF012O24+ ACAAGACAGCTATTGTGTTTATCAACACTAAGAAACAGGCTGATACTGTTTCTAAGAATT
rJMFF013B15+ ACACTAAGAAACAGGCTGATACTGTTTCTAAGAATT
____________________________________________________________
consensus ACAAGACAGCTATTGTGTTTATCAACACTAAGAAACAGGCTGATACTGTTTCTAAGAATT
. : . : . : . : . : . :
rJMFF016D16+ CAGAGGG
rJMSF034J01+ CAGAGGG
rJMFF012O24+ TGGATAAGGCAGGCTATAGAGTGACAACATTGCACGGTGGAAAGTCACAGGAACAGAGGG
rJMFF013B15+ TGGATAAGGCAGGCTATAGAGTGACAACATTGCACGGTGGAAAGTCACAGGAACAGAGGG
____________________________________________________________
consensus TGGATAAGGCAGGCTATAGAGTGACAACATTGCACGGTGGAAAGTCACAGGAACAGAGGG
. : . : . : . : . : . :
rJMFF016D16+ AAATCAGCCTTGAAGGATTTCGGACAAAGAGGTATAATGTGTTGGTTGCAACAGATGTTG
rJMSF034J01+ AAATCAGCCTTGAAGGATTTCGGACAAAGAGGTATAATGTGTTGGTTGCAACAGATGTTG
rJMFF012O24+ AAATCAGCCTTGAAGGATTTCGGACAAAGAGGTATAATGTGTTGGTTGCAACAGATGTTG
rJMFF013B15+ AAATCAGCCTTGAAGGATTTCGGACAAAGAGGTATAATGTGTTGGTTGCAACAGATGTTG
____________________________________________________________
consensus AAATCAGCCTTGAAGGATTTCGGACAAAGAGGTATAATGTGTTGGTTGCAACAGATGTTG
. : . : . : . : . : . :
rJMFF016D16+ CAGGACGTGGGATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCAATA
rJMSF034J01+ CAGGACGTGGGATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCAATA
rJMFF012O24+ CAGGACGTGGGATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCAATA
rJMFF013B15+ CAGGACGTGGGATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCAATA
____________________________________________________________
consensus CAGGACGTGGGATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCAATA
. : . : . : . : . : . :
rJMFF016D16+ ATATTGAAGCATACACCCATCGTATTGGTCGAACTGGGCGTGCTGGGAAGACTGGTGTAG
rJMSF034J01+ ATATTGAAGCATACACCCATCGTATTGGTCGAACTGGGCGTGCTGGGAAGACTGGTGTAG
rJMFF012O24+ ATATTGAAGCATACACCCATCGTATTGGTCGAACTGGGCGTGCTGGGAAGACTGGTGTAG
rJMFF013B15+ ATATTGAAGCATACACCCATCGTATTGGTCGAACTGGGCGTGCTGGGAAGACTGGTGTAG
____________________________________________________________
consensus ATATTGAAGCATACACCCATCGTATTGGTCGAACTGGGCGTGCTGGGAAGACTGGTGTAG
. : . : . : . : . : . :
rJMFF016D16+ CAACAACATTCTTGACTCTTCAGGACTCAGAAGTCTTCTATGATCTTAAGCAAATGCTCA
rJMSF034J01+ CAACAACATTCTTGACTCTTCAGGACTCAGAAGTCTTCTATGATCTTAAGCAAATGCTCA
rJMFF012O24+ CAACAACATTCTTGACTCTTCAGGACTCAGAAGTCTTCTATGATCTTAAGCAAATGCTCA
rJMFF013B15+ CAACAACATTCTTGACTCTTCAGGACTCAGAAGTCTTCTATGATCTTAAGCAAATGCTCA
____________________________________________________________
consensus CAACAACATTCTTGACTCTTCAGGACTCAGAAGTCTTCTATGATCTTAAGCAAATGCTCA
. : . : . : . : . : . :
rJMFF016D16+ TTCAAAGCAACAGTCCTGTGCCTCCTGAACTTGCTAGACATGAGGCTTCAAAGTTCAAGC
rJMSF034J01+ TTCAAAGCAACAGTCCTGTGCCTCCTGAACTTGCTAGACATGAGGCTTCAAAGTTCAAGC
rJMFF012O24+ TTCAAAGCAACAGTCCTGTGCCTCCTGAACTTGCTAGACATGAGGCTTCAAAGTTCAAGC
rJMFF013B15+ TTCAAAGCAACAGTCCTGTGCCTCCTGAACTTGCTAGACATGAGGCTTCAAAGTTCAAGC
____________________________________________________________
consensus TTCAAAGCAACAGTCCTGTGCCTCCTGAACTTGCTAGACATGAGGCTTCAAAGTTCAAGC
. : . : . : . : . : . :
rJMFF016D16+ CAGGAAGTATTCCTGACAGACCACCCAGACGAAATGACACTGTTTTTGCTCATTGAAGTC
rJMSF034J01+ CAGGAAGTATTCCTGACAGACCACCCAGACGAAATGACACTGTTTTTGCTCATTGAAGTC
rJMFF012O24+ CAGGAAGTATTCCTGACAGACCACCCAGACGAAATGACACTGTTTTTGCTCATTGAAGTC
rJMFF013B15+ CAGGAAGTATTCCTGACAGACCACCCAGACGAAATGACACTGTTTTTGCTCATTGAAGTC
____________________________________________________________
consensus CAGGAAGTATTCCTGACAGACCACCCAGACGAAATGACACTGTTTTTGCTCATTGAAGTC
. : . : . : . : . : . :
rJMFF016D16+ AAGAGTCTAATGGTTTCATGCGGAAATACTGAGTTGATATGATGAATGAGTTGGTGGACT
rJMSF034J01+ AAGAGTCTAATGGTTTCATGCGGAAATACTGAGTTGATATGATGAATGAGTTGGTGGACT
rJMFF012O24+ AAGAGTCTAATGGTTTCATGCGGAAATACTGAGTTGATATGATGAATGAGTTGGTGGACT
rJMFF013B15+ AAGAGTCTAATGGTTTCATGCGGAAATACTGAGTTGATATGATGAATGAGTTGGTGGACT
____________________________________________________________
consensus AAGAGTCTAATGGTTTCATGCGGAAATACTGAGTTGATATGATGAATGAGTTGGTGGACT
. : . : . : . : . : . :
rJMFF016D16+ TGGTGGGGGCTGCCTTTTGGTTCTGGATCTCTTCGGGATATATTTTTGTCATTGCCACAT
rJMSF034J01+ TGGTGGGGGCTGCCTTTTGGTTCTGGATCTCTTCGGGATATATTTTTGTCATTGCCACAT
rJMFF012O24+ TGGTGGGGGCTGCCTTTTGGTTCTGGATCTCTTCGGGATATATTTTTGTCATTGCCACAT
rJMFF013B15+ TGGTGGGGGCTGCCTTTTGGTTCTGGATCTCTTCGGGATATATTTTTGTCATTGCCACAT
____________________________________________________________
consensus TGGTGGGGGCTGCCTTTTGGTTCTGGATCTCTTCGGGATATATTTTTGTCATTGCCACAT
. : . : . : . : . : . :
rJMFF016D16+ TATCTGTGGAAAGAGGTACTCTAAATTCACCAACATTGTTCTGTAATGAAATAATTGCCA
rJMSF034J01+ TATCTGTGGAAAGAGGTACTCTAAATTCACCAACATTGTTCTGTAATGAAATAATTGCCA
rJMFF012O24+ TATCTGTGGAAAGAGGTACTCTAAATTCACCAACATTGTTCTGTAATGAAATAATTGCCA
rJMFF013B15+ TATCTGTGGAAAGAGGTACTCTAAATTCACCAACATTGTTCTGTAATGAAATAATTGCCA
____________________________________________________________
consensus TATCTGTGGAAAGAGGTACTCTAAATTCACCAACATTGTTCTGTAATGAAATAATTGCCA
. : . : . : . : . : . :
rJMFF016D16+ TTATC
rJMSF034J01+ TTATC
rJMFF012O24+ TTATCATATGTAATTTTAAACTGGTGGAGATGCATGAACATGACCACTGCT
rJMFF013B15+ TTATCATATGTAATTTTAAACTGGTGGAGATGCATGAACATGACCACTGCTGGATTATGA
____________________________________________________________
consensus TTATCATATGTAATTTTAAACTGGTGGAGATGCATGAACATGACCACTGCTGGATTATGA