| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012I24 | Sequence | 512 | 002220 (3) | ref|XP_009587779.1| | 1e-45 | PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor | 737 | 012258 (3) | ref|XP_009631856.1| | 3e-32 | PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor |
| JMSF022D10 | Sequence | 651 | 002220 (3) | ref|XP_009587779.1| | 2e-53 | PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor | 782 | 012258 (3) | ref|XP_009631856.1| | 6e-39 | PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor |
| JMSF029F18 | Sequence | 618 | 002220 (3) | ref|XP_009587779.1| | 3e-73 | PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor | 783 | 012258 (3) | ref|XP_009631857.1| | 5e-45 | PREDICTED: protease Do-like 2, chloroplastic isoform X2 [Nicotiana tomentosifor |
This contig is upended
. : . : . : . : . : . :
rJMSF022D10+ ATATGNAGACATAAGTAATGAGCAGATCTTGAA
rJMSF029F18+ AGACATAAGTAATGAGCAGATC-TGAA
____________________________________________________________
consensus ATATGNAGACATAAGTAATGAGCAGATCTTGAA
. : . : . : . : . : . :
rJMSF022D10+ GTTGAATGGCAAACGAATTAGAAACATCCACCA-TTGGCTCATCTACTTGATTCTTGCAA
rJMSF029F18+ GTTGAATGGCAAACGAATTAGAAACATCCACCATTTGGCTCATCTACTTGATTCTTGCAA
rJMFF012I24+ CTACTTGATTCTNGCAA
____________________________________________________________
consensus GTTGAATGGCAAACGAATTAGAAACATCCACCATTTGGCTCATCTACTTGATTCTTGCAA
. : . : . : . : . : . :
rJMSF022D10+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
rJMSF029F18+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
rJMFF012I24+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
____________________________________________________________
consensus GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
. : . : . : . : . : . :
rJMSF022D10+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
rJMSF029F18+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
rJMFF012I24+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
____________________________________________________________
consensus AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
. : . : . : . : . : . :
rJMSF022D10+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
rJMSF029F18+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
rJMFF012I24+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
____________________________________________________________
consensus CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
. : . : . : . : . : . :
rJMSF022D10+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
rJMSF029F18+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
rJMFF012I24+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
____________________________________________________________
consensus ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
. : . : . : . : . : . :
rJMSF022D10+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
rJMSF029F18+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
rJMFF012I24+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
____________________________________________________________
consensus AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
. : . : . : . : . : . :
rJMSF022D10+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
rJMSF029F18+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
rJMFF012I24+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
____________________________________________________________
consensus GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
. : . : . : . : . : . :
rJMSF022D10+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
rJMSF029F18+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
rJMFF012I24+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
____________________________________________________________
consensus TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
. : . : . : . : . : . :
rJMSF022D10+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
rJMSF029F18+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
rJMFF012I24+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
____________________________________________________________
consensus AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
. : . : . : . : . : . :
rJMSF022D10+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
rJMSF029F18+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
rJMFF012I24+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
____________________________________________________________
consensus TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
. : . : . : . : . : . :
rJMSF022D10+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
rJMSF029F18+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
rJMFF012I24+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
____________________________________________________________
consensus AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
. : . : . : . : . : . :
rJMSF022D10+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
rJMSF029F18+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
rJMFF012I24+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
____________________________________________________________
consensus TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
. : . : . : . : . : . :
rJMSF022D10+ TAGAGAAACTGTAAACCTATGTTGTCATT
rJMSF029F18+ TAGAGAAACTGTAAACCTATGTTGTCATT
rJMFF012I24+ TAGAGAAACTGTAAACCTATGTTGTCATTTGTCATTTTTTCTACATGCGGGCGAATAAAA
____________________________________________________________
consensus TAGAGAAACTGTAAACCTATGTTGTCATTTGTCATTTTTTCTACATGCGGGCGAATAAAA