Contig 012258:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012I24Sequence512002220 (3)ref|XP_009587779.1|1e-45PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor737012258 (3)ref|XP_009631856.1|3e-32PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor
JMSF022D10Sequence651002220 (3)ref|XP_009587779.1|2e-53PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor782012258 (3)ref|XP_009631856.1|6e-39PREDICTED: protease Do-like 2, chloroplastic isoform X1 [Nicotiana tomentosifor
JMSF029F18Sequence618002220 (3)ref|XP_009587779.1|3e-73PREDICTED: protease Do-like 2, chloroplastic isoform X3 [Nicotiana tomentosifor783012258 (3)ref|XP_009631857.1|5e-45PREDICTED: protease Do-like 2, chloroplastic isoform X2 [Nicotiana tomentosifor

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022D10+ ATATGNAGACATAAGTAATGAGCAGATCTTGAA
rJMSF029F18+ AGACATAAGTAATGAGCAGATC-TGAA
                      ____________________________________________________________
consensus ATATGNAGACATAAGTAATGAGCAGATCTTGAA
 
. : . : . : . : . : . :
rJMSF022D10+ GTTGAATGGCAAACGAATTAGAAACATCCACCA-TTGGCTCATCTACTTGATTCTTGCAA
rJMSF029F18+ GTTGAATGGCAAACGAATTAGAAACATCCACCATTTGGCTCATCTACTTGATTCTTGCAA
rJMFF012I24+ CTACTTGATTCTNGCAA
                      ____________________________________________________________
consensus GTTGAATGGCAAACGAATTAGAAACATCCACCATTTGGCTCATCTACTTGATTCTTGCAA
 
. : . : . : . : . : . :
rJMSF022D10+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
rJMSF029F18+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
rJMFF012I24+ GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
                      ____________________________________________________________
consensus GGATAAATATCTAGTTTTTGAATTTGCGGACAACTTTTTGGTCGTCTTGGAAAGGGAGGC
 
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rJMSF022D10+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
rJMSF029F18+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
rJMFF012I24+ AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
                      ____________________________________________________________
consensus AGCTTTAACTACATCCACTAGCATCCTTAAAGACTATGGCATTCCATCTGAAAGATCTTC
 
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rJMSF022D10+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
rJMSF029F18+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
rJMFF012I24+ CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
                      ____________________________________________________________
consensus CGATCTTATGGGACCATATGTGGACTCAATAGGACAAAATGATGCAGTGGATCAGCAAGA
 
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rJMSF022D10+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
rJMSF029F18+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
rJMFF012I24+ ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
                      ____________________________________________________________
consensus ATTCGGGGATAGTGCAGAATCTAACTCTGAATTCGGTTTTGATGGGCTTCTTTGGGCTTG
 
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rJMSF022D10+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
rJMSF029F18+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
rJMFF012I24+ AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
                      ____________________________________________________________
consensus AAAATGTCCACCGCACCCTTCAACAAAGTGAGCCCCCTAAAACAGTTCCTTCTCATGGAT
 
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rJMSF022D10+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
rJMSF029F18+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
rJMFF012I24+ GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
                      ____________________________________________________________
consensus GCAGATTCACATTGCTCTTGGACATTTACCTGGAAATGTCTGAGCGCTCCAGAGAATAAT
 
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rJMSF022D10+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
rJMSF029F18+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
rJMFF012I24+ TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
                      ____________________________________________________________
consensus TTATGGAGAGAATGTAGAGTCGTGGGCTTGTTTAGGAATAATTTGGAGGTAGAGAAGCTA
 
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rJMSF022D10+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
rJMSF029F18+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
rJMFF012I24+ AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
                      ____________________________________________________________
consensus AAAAATCTGCAATTTTTTTCTGATACAAAACATGGGGTCATTGAATGCATCCTCTCCGGG
 
. : . : . : . : . : . :
rJMSF022D10+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
rJMSF029F18+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
rJMFF012I24+ TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
                      ____________________________________________________________
consensus TGAAATTAAGTCCATTTATTGTACTTCGATCTGCATGGAGCATGAGTCTAGGCTTGTTCC
 
. : . : . : . : . : . :
rJMSF022D10+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
rJMSF029F18+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
rJMFF012I24+ AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
                      ____________________________________________________________
consensus AGAGAAGGATATCATGCAGTGATTGCAATTGCATGCAGAAGAGCTGGGAATTGTCAATTA
 
. : . : . : . : . : . :
rJMSF022D10+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
rJMSF029F18+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
rJMFF012I24+ TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
                      ____________________________________________________________
consensus TCCAATCTTTACTGGTATGGATTATATGGCTATATGCTACTCCAAATATGACTTGAGGTG
 
. : . : . : . : . : . :
rJMSF022D10+ TAGAGAAACTGTAAACCTATGTTGTCATT
rJMSF029F18+ TAGAGAAACTGTAAACCTATGTTGTCATT
rJMFF012I24+ TAGAGAAACTGTAAACCTATGTTGTCATTTGTCATTTTTTCTACATGCGGGCGAATAAAA
                      ____________________________________________________________
consensus TAGAGAAACTGTAAACCTATGTTGTCATTTGTCATTTTTTCTACATGCGGGCGAATAAAA