Contig 012253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011H12Sequence490000444 (4)ref|XP_009618751.1|101PREDICTED: uncharacterized protein LOC104110895 [Nicotiana tomentosiformis]748012253 (4)ref|XP_009618751.1|141PREDICTED: uncharacterized protein LOC104110895 [Nicotiana tomentosiformis]
JMSF001J16Sequence339000444 (4)677012253 (4)ref|XP_009618751.1|152PREDICTED: uncharacterized protein LOC104110895 [Nicotiana tomentosiformis]
JMSF006E04Sequence385012253 (4)ref|XP_008226437.1|4e-18PREDICTED: general transcriptional corepressor trfA [Prunus mume]316013384 (9)ref|XP_006361449.1|6e-15PREDICTED: GDSL esterase/lipase At5g03610-like [Solanum tuberosum]
JMSF011G14Sequence425000444 (4)ref|XP_009763999.1|114PREDICTED: uncharacterized protein LOC104215799 [Nicotiana sylvestris]780012253 (4)ref|XP_009618751.1|141PREDICTED: uncharacterized protein LOC104110895 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF011G14+                                             AGAAGATGATGAAGAAGAAGAATCN
                      ____________________________________________________________
consensus                                                AGAAGATGATGAAGAAGAAGAATCN
 
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rJMSF011G14+          GATACAGAGATTGAGAACACAACATTGAAGGAAGAACTGGAGAAAGAAGAGGAAACTGAG
rJMFF011H12+                                          AGAACTGGAGAAAGAAGAGGAAACTGAG
                      ____________________________________________________________
consensus             GATACAGAGATTGAGAACACAACATTGAAGGAAGAACTGGAGAAAGAAGAGGAAACTGAG
 
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rJMSF011G14+          GATGAAAGTGTGAAAAAAGTGTCGAAGAAAGAAGTATTGCCAGAGTGTTTGCTGTTAATG
rJMSF001J16+                      AAAAAAGTGTCGAAGAAAGAAGTATTGCCAGAGTGTTTGCTGTTAATG
rJMFF011H12+          GATGAAAGTGTGAAAAAAGTGTCGAAGAAAGAAGTATTGCCAGAGTGTTTGCTGTTAATG
                      ____________________________________________________________
consensus             GATGAAAGTGTGAAAAAAGTGTCGAAGAAAGAAGTATTGCCAGAGTGTTTGCTGTTAATG
 
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rJMSF011G14+          ATGTGTGAACCCAAGCTATCCATGGAGGTATCAAAGGAAACATGGGTGTGCAGTACGGAT
rJMSF001J16+          ATGTGTGAACCCAAGCTATCCATGGAGGTATCAAAGGAAACATGGGTGTGCAGTACGGAT
rJMFF011H12+          ATGTGTGAACCCAAGCTATCCATGGAGGTATCAAAGGAAACATGGGTGTGCAGTACGGAT
                      ____________________________________________________________
consensus             ATGTGTGAACCCAAGCTATCCATGGAGGTATCAAAGGAAACATGGGTGTGCAGTACGGAT
 
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rJMSF011G14+          TTCATCAGATGGCAACCGGAGAAGCAACAAGTCAAAGTAAGCAAGACCGACGCCTCTGAT
rJMSF001J16+          TTCATCAGATGGCAACCGGAGAAGCAACAAGTCAAAGTAAGCAAGACCGACGCCTCTGAT
rJMFF011H12+          TTCATCAGATGGCAACCGGAGAAGCAACAAGTCAAAGTAAGCAAGACCGACGCCTCTGAT
                      ____________________________________________________________
consensus             TTCATCAGATGGCAACCGGAGAAGCAACAAGTCAAAGTAAGCAAGACCGACGCCTCTGAT
 
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rJMSF011G14+          GACTCCAACAAAAGACTCTCTACGGATACCAAAAAACCATCAGGTACTACTACTAATCCT
rJMSF001J16+          GACTCCAACAAAAGACTCTCTACGGATACCAAAAAACCATCAGGTACTACTACTAATCCT
rJMFF011H12+          GACTCCAACAAAAGACTCTCTACGGATACCAAAAAACCATCAGGTACTACTACTAATCCT
                      ____________________________________________________________
consensus             GACTCCAACAAAAGACTCTCTACGGATACCAAAAAACCATCAGGTACTACTACTAATCCT
 
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rJMSF011G14+          ACGCGTCCTGCGCCGCCGCCGGACAACAAGAACCACCACCTACTCCAGCCGCCGCGGTCG
rJMSF001J16+          ACGCGTCCTGCGCCGCCGCCGGACAACAAGAACCACCACCTACTCCAGCCGCCGCGGTCG
rJMFF011H12+          ACGCGTCCTGCGCCGCCGCCGGACAACAAGAACCACCACCTACTCCAGCCGCCGCGGTCG
                      ____________________________________________________________
consensus             ACGCGTCCTGCGCCGCCGCCGGACAACAAGAACCACCACCTACTCCAGCCGCCGCGGTCG
 
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rJMSF011G14+          TCGTGCTCTCTGCCGCCTCGGTCGTCCTGCTCGCTGCCGCCTCGGTCGTCCTGCTCGCTA
JMSF006E04+                      GCCGCCGCGGTCGTCGTGCTCACTGCCGCNTCGGTCGTCCTGCTCGCTG
rJMSF001J16+          TCGTGCTCTCTGCCGCCTCGGTCGTCCTGCTCGCTGCCGCCTCGGTCGTCCTGCTCGCTA
rJMFF011H12+          TCGTGCTCTCTGCCGCCTCGGTCGTCCTGCTCGCTGCCGCCTCGGTCGTCCTGCTCGCTA
                      ____________________________________________________________
consensus             TCGTGCTCTCTGCCGCCTCGGTCGTCCTGCTCGCTGCCGCCTCGGTCGTCCTGCTCGCTA
 
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rJMSF011G14+          CCGGCGGCTGCAGTTTCCGGCGTGTCGATGGCGAGTATGATAGAGCAGAAGCTGGTGAAC
JMSF006E04+           CCGGCGGCTGCAGTTTCCGGCGTGTCCATGGCGAGTATGATAGAGCAGAAGCTGGTGAAC
rJMSF001J16+          CCGGCGGCTGCAGTTTCCGGCGTGTCGATGGCGAGTATGATAGAGCAGAAGCTGGTGAAC
rJMFF011H12+          CCGGCGGCTGCAGTTTCCGGCGTGTCGATGGCGAGTATGATAGAGCAGAAGCTGGTGAAC
                      ____________________________________________________________
consensus             CCGGCGGCTGCAGTTTCCGGCGTGTCGATGGCGAGTATGATAGAGCAGAAGCTGGTGAAC
 
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rJMSF011G14+          GCGGTGGGATACGAGCCGTTTGTGCTAACCAGGTGTAAGTCGGAGCCGATGAGAACGGCG
JMSF006E04+           GCGGTGGGATACGAGCCGTTTGTGCTAACCAGGTGTAAGTCGGAGCCGATGAGAACGGCG
rJMSF001J16+          GCGGTGGGATACGAGCCGTTTGTGCTAACCAGGTGTAAGTCGGAGCCGATGAGAACGGCG
rJMFF011H12+          GCGGTGGGATACGAGCCGTTTGTGCTAACCAGGTGTAAGTCGGAGCCGATGAGAACGGCG
                      ____________________________________________________________
consensus             GCGGTGGGATACGAGCCGTTTGTGCTAACCAGGTGTAAGTCGGAGCCGATGAGAACGGCG
 
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rJMSF011G14+          GGTAAGCTAGCCGCGGCGGAGCCTTGTTTCTGGAAAAACAGGAAGCTGGAGCCGCATCGT
JMSF006E04+           GCTAAGCTAGCGGCGGCGGAGCCTTGTTTCTGGAAAAACAGGAAGCTGGAGCCGCATCGT
rJMSF001J16+          GGTAAGCTAGCCGCGGCGGAGCCTTGTTTCTGGAAAAACAGGAAGCTGGAGCCGCATCGT
rJMFF011H12+          GGTAAGCTAGCCGCGGCGGAGCCTTGTTTCTGGAAAAACAGGAAGCTGGAGCCGCATCGT
                      ____________________________________________________________
consensus             GGTAAGCTAGCCGCGGCGGAGCCTTGTTTCTGGAAAAACAGGAAGCTGGAGCCGCATCGT
 
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rJMSF011G14+          CGCGCCACATTCGGGTTCGGCGCCGCTGGTGTCGGGTTCTGACCCATCTGAGCTGTCAAA
JMSF006E04+           CGCGCCACATTCGGGTTCGGCGCCGCTGGTGTCGGGTTCTGACCCATCTGAGCTGTC-AA
rJMSF001J16+          CGCGCCACATTCGGGTTCGGCGCCGCTGGTGTCGGGTTCTGACCCATCTGAGCTGTCAAA
rJMFF011H12+          CGCGCCACATTCGGGTTCGGCGCCGCTGGTGTCGGGTTCTGACCCATCTGAGCTGTCAAA
                      ____________________________________________________________
consensus             CGCGCCACATTCGGGTTCGGCGCCGCTGGTGTCGGGTTCTGACCCATCTGAGCTGTCAAA
 
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rJMSF011G14+          ACTCAAAATGAAGAGCACCTTTACGGTGTGGTTTGTCGTATCGGTAACTGTAGTCTTCTC
JMSF006E04+           ACTCAAAATGAAGAGCACCTTTACGCTGTGGTTTGTCGTA                    
rJMSF001J16+          ACTCAAAATGAAGAGCACCTTTACGGTGTGGTTTGTCGTATCGGTAACTGTAGTCTTCTC
rJMFF011H12+          ACTCAAAATGAAGAGCACCTTTACGGTGTGGTTTGTCGTATCGGTAACTGTAGTCTTCTC
                      ____________________________________________________________
consensus             ACTCAAAATGAAGAGCACCTTTACGGTGTGGTTTGTCGTATCGGTAACTGTAGTCTTCTC
 
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rJMSF011G14+          TCGCAATTAGCCGTTTGTAAATTGTCTTT                               
rJMSF001J16+          TCGCAATTAGCCGTTTGTAAATTGTCTTT                               
rJMFF011H12+          TCGCAATTAGCCGTTTGTAAATTGTCTTTTAATTATTTTTTCAACGAATTCTGAGCATTA
                      ____________________________________________________________
consensus             TCGCAATTAGCCGTTTGTAAATTGTCTTTTAATTATTTTTTCAACGAATTCTGAGCATTA