Contig 012252:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011G15Sequence529001691 (6)735012252 (6)emb|CDP08361.1|4e-30unnamed protein product [Coffea canephora]
JMFF019P24Sequence539001691 (6)736012252 (6)emb|CDP08361.1|2e-32unnamed protein product [Coffea canephora]
JMFF020J08Sequence520001691 (6)751012252 (6)emb|CDP08361.1|7e-33unnamed protein product [Coffea canephora]
JMFF025A03Sequence544001691 (6)750012252 (6)emb|CDP08361.1|8e-34unnamed protein product [Coffea canephora]
JMFF025K04Sequence549001691 (6)737012252 (6)emb|CDP08361.1|2e-32unnamed protein product [Coffea canephora]
JMFF032A07Sequence501001691 (6)652012252 (6)emb|CDP08361.1|1e-27unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF020J08+                                      ACNTATTAATGAAGTTGAGAAGACTGTTGATA
rJMFF025K04+                                            TAATGAAGTTGAGAAGACTGTTGATA
rJMFF019P24+                                            TAATGAAGTTGAGAAGACTGTTGATA
rJMFF025A03+                                            TAATGAAGTTGAGAAGACTGTTGATA
rJMFF011G15+                                                       AGAAGACTGTTGATA
                      ____________________________________________________________
consensus                                         ACNTATTAATGAAGTTGAGAAGACTGTTGATA
 
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rJMFF020J08+          CTGAGAAACAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
rJMFF025K04+          CTGAGAAACAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
rJMFF019P24+          CTGAGAAACAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
rJMFF025A03+          CTGAGAAACAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
rJMFF011G15+          CTGAGAANCAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
                      ____________________________________________________________
consensus             CTGAGAAACAAACTAGCCAGGAAGATACTGGAGATGCCACCAAGGATTCTCCACCAAATG
 
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rJMFF020J08+          AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
rJMFF025K04+          AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
rJMFF019P24+          AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
rJMFF032A07+                 AGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
rJMFF025A03+          AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
rJMFF011G15+          AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
                      ____________________________________________________________
consensus             AGACCGAAGAAAAGGAGCCCGAGGAGAAGGAGATGACTTTGGAGGAATATGAGAAGGTAC
 
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rJMFF020J08+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
rJMFF025K04+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
rJMFF019P24+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
rJMFF032A07+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
rJMFF025A03+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
rJMFF011G15+          TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
                      ____________________________________________________________
consensus             TGGAGGAGAAGAGGAAGGCGTTGCTTGCATCAAAGCCCGAGGAGAGAAAAGTGTGTTTGG
 
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rJMFF020J08+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
rJMFF025K04+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
rJMFF019P24+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
rJMFF032A07+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
rJMFF025A03+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
rJMFF011G15+          ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
                      ____________________________________________________________
consensus             ATAAGGAGTTTGCGTCGATGCAGTTGCTTTCCAACAAGAAGAATGATGAGGAAGTCTTCA
 
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rJMFF020J08+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
rJMFF025K04+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
rJMFF019P24+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
rJMFF032A07+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
rJMFF025A03+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
rJMFF011G15+          TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
                      ____________________________________________________________
consensus             TTAAACTGGGATCTGAGAAAGAAAAAAAGAAAGAGGCTGGAGAAAAGGTTAAAAAGACGA
 
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rJMFF020J08+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
rJMFF025K04+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
rJMFF019P24+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
rJMFF032A07+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
rJMFF025A03+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
rJMFF011G15+          AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
                      ____________________________________________________________
consensus             AAAACATCAACGAGTTTTTGAAACCAGCTGAAGGAGAAAACTACTATCGCTCTGGTGGAC
 
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rJMFF020J08+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
rJMFF025K04+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
rJMFF019P24+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
rJMFF032A07+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
rJMFF025A03+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
rJMFF011G15+          GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
                      ____________________________________________________________
consensus             GTGGGAGGGGCCGTGGGCGTGGCCGAGGAGGATACGGTGGAAGCCTGTCCAGTGTTGACG
 
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rJMFF020J08+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
rJMFF025K04+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
rJMFF019P24+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
rJMFF032A07+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
rJMFF025A03+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
rJMFF011G15+          CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
                      ____________________________________________________________
consensus             CTCCATCTATTGAGGATGTCGGGCAGTTCCCTACCTTGGGTAAAAAGTGAGTGATGAACG
 
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rJMFF020J08+          ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
rJMFF025K04+          ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
rJMFF019P24+          ACGCGACGCTTTTCCATCGGCACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
rJMFF032A07+          ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
rJMFF025A03+          ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
rJMFF011G15+          ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
                      ____________________________________________________________
consensus             ACGCGACGCTTTTCCATCGACACCTTATGACTGTGACTTGTGATTGTTTCGACTTAGAAA
 
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rJMFF020J08+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
rJMFF025K04+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
rJMFF019P24+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
rJMFF032A07+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
rJMFF025A03+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
rJMFF011G15+          CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
                      ____________________________________________________________
consensus             CCCGCTGGACCTGGTTGTTTCTTTACTACAATTATCTTTTTAAACTTGTTTTTTAAATAG
 
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rJMFF020J08+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
rJMFF025K04+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
rJMFF019P24+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
rJMFF032A07+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
rJMFF025A03+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
rJMFF011G15+          TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
                      ____________________________________________________________
consensus             TGTACATTTAGTTGTTACCGTCCGAGGGTTATATCTTTAACTTTCTTGGTTACAGTCTCT
 
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rJMFF020J08+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGGATCTTGAC 
rJMFF025K04+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGG         
rJMFF019P24+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGG          
rJMFF032A07+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGGATCTTGAC 
rJMFF025A03+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGGATCTTGAC 
rJMFF011G15+          ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGGATCTTGACT
                      ____________________________________________________________
consensus             ACTTTTAGAATTTAGGTACTCTTTTTACTACATCTTTGATTTCTTTCTGGGATCTTGACT