| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010L15 | Sequence | 658 | 005278 (6) | ref|XP_009796493.1| | 2e-96 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris] | 720 | 012251 (5) | ref|XP_009614011.1| | 277 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nicotiana tomentosiformis] |
| JMFF010O24 | Sequence | 526 | 005278 (6) | ref|XP_009619763.1| | 3e-50 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana tomentosiformis | 766 | 012251 (5) | ref|XP_009796493.1| | 2e-92 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris] |
| JMFF024J17 | Sequence | 529 | 005278 (6) | ref|XP_009796493.1| | 2e-72 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris] | 720 | 012251 (5) | ref|XP_009614011.1| | 276 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nicotiana tomentosiformis] |
| JMSF043H19 | Sequence | 790 | 005278 (6) | emb|CDO97777.1| | 1e-113 | unnamed protein product [Coffea canephora] | 670 | 012251 (5) | gb|KDO53740.1| | 1e-80 | hypothetical protein CISIN_1g0080551mg, partial [Citrus sinensis] |
| JMSF045O23 | Sequence | 754 | 005278 (6) | ref|XP_009796493.1| | 6e-99 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris] | 674 | 012251 (5) | ref|XP_009796493.1| | 4e-89 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF024J17+ T
rJMFF010L15+ T
rJMSF045O23+ CCCTCACCTATCGGACT
rJMFF010O24+ GCTAACGTTTTACTTGATTCGGAGTTCAACCCTCACCTATCGGACT
____________________________________________________________
consensus GCTAACGTTTTACTTGATTCGGAGTTCAACCCTCACCTATCGGACT
. : . : . : . : . : . :
rJMFF024J17+ CTGGGTTAGCTAGCCTTATCCCAGACGAAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
rJMSF043H19+ AAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
rJMFF010L15+ CTGGGTTAGCTAGCCTTATCCCAGACGAAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
rJMSF045O23+ CTGGGTTAGCTAGCCTTATCCCAGACGAAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
rJMFF010O24+ CTGGGTTAGCTAGCCTTATCCCAGACGAAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
____________________________________________________________
consensus CTGGGTTAGCTAGCCTTATCCCAGACGAAGATCAGGCTCTAAACCAGAATTCAGCGTCTG
. : . : . : . : . : . :
rJMFF024J17+ GATATGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
rJMSF043H19+ GATATGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
rJMFF010L15+ GATATGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
rJMSF045O23+ GATATGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
rJMFF010O24+ GATAAGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
____________________________________________________________
consensus GATATGGTGCGCCTGAGGTGGCCATGTCTGGTCAGTATACAATAAAGAGCGATGTGTACA
. : . : . : . : . : . :
rJMFF024J17+ GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
rJMSF043H19+ GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
rJMFF010L15+ GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
rJMSF045O23+ GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
rJMFF010O24+ GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
____________________________________________________________
consensus GTTTTGGCGTTGCCATGTTGGAACTTCTTACTGGAAGAACACCATTTGACAGTTCAAGGC
. : . : . : . : . : . :
rJMFF024J17+ CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
rJMSF043H19+ CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
rJMFF010L15+ CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
rJMSF045O23+ CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
rJMFF010O24+ CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
____________________________________________________________
consensus CAAGACCCGAGCAATCCTTAGTTCGATGGGCTACACCTCAGCTCCACGACATTGACGCCT
. : . : . : . : . : . :
rJMFF024J17+ TATCTAAGATGGTTGATCCAGCACTGAGAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
rJMSF043H19+ TATCTAAGATGGTTGATCCAGCACTGAAAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
rJMFF010L15+ TATCTAAGATGGTTGATCCAGCACTGAAAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
rJMSF045O23+ TATCTAAGATGGTTGATCCAGCACTGAAAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
rJMFF010O24+ TATCTAAGATGGTTGATCCAGCACTGAAAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
____________________________________________________________
consensus TATCTAAGATGGTTGATCCAGCACTGAAAGGGCTCTATCCAGTTAAATCTCTCTCCCGCT
. : . : . : . : . : . :
rJMFF024J17+ TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
rJMSF043H19+ TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
rJMFF010L15+ TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
rJMSF045O23+ TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
rJMFF010O24+ TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
____________________________________________________________
consensus TTGCTGATGTCATTGCACTATGTGTCCAGCCGGAGCCTGAGTTCCGACCACCTATGTCGG
. : . : . : . : . : . :
rJMFF024J17+ AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
rJMSF043H19+ AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
rJMFF010L15+ AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
rJMSF045O23+ AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
rJMFF010O24+ AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
____________________________________________________________
consensus AAGTTGTTGAGGCGTTGGTCCGGCTGGTGCAACGGGCCAACATGAGCAGGAGGACATTCG
. : . : . : . : . : . :
rJMFF024J17+ GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
rJMSF043H19+ GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
rJMFF010L15+ GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
rJMSF045O23+ GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
rJMFF010O24+ GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
____________________________________________________________
consensus GCGCTGATTCAAGGACCAGGTCTGGTAGCGCAGATTCTCAGGAATACGAGCTTTAGATTC
. : . : . : . : . : . :
rJMFF024J17+ CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
rJMSF043H19+ CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
rJMFF010L15+ CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
rJMSF045O23+ CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
rJMFF010O24+ CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
____________________________________________________________
consensus CTCGGACGCCATGTTTTGCTGCTCCTAATCCTGATGTTCGTTGTATCATAACGGTAGCGG
. : . : . : . : . : . :
rJMFF024J17+ ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
rJMSF043H19+ ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
rJMFF010L15+ ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
rJMSF045O23+ ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
rJMFF010O24+ ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
____________________________________________________________
consensus ATTCTGTAACATTGTTAATAGCGTGATCCGTTTCGTTTGCATTTGCTGCCATTAGATTAG
. : . : . : . : . : . :
rJMFF024J17+ CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCTTGTTTTTGTAATAT
rJMSF043H19+ CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCTTGTTTTTGTAATAT
rJMFF010L15+ CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCTTGTTTTTGTAATAT
rJMSF045O23+ CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCT
rJMFF010O24+ CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCTTGTTTTTGTAATAT
____________________________________________________________
consensus CTTCTTCTTCTTCTTCACCTTCTGCAGAACTGGACTCCTGGATTCTTGTTTTTGTAATAT
. : . : . : . : . : . :
rJMFF024J17+ GGGAGTCTATTGAGAAGAGTTGTGTACTATCTCACTCTGGATTTT
rJMSF043H19+ GGGAGTCTATTGAGAAGAGTTGTGTACTATCTCACTC
rJMFF010L15+ GGGAGTCTATTGAGAAGAGTTGTGTACTATCTCACTCTGGATTTT
rJMFF010O24+ GGGAGTCTATTGAGAAGAGTTGTGTACTATCTCACTCTGGATTTTTCCTCCTATACAACA
____________________________________________________________
consensus GGGAGTCTATTGAGAAGAGTTGTGTACTATCTCACTCTGGATTTTTCCTCCTATACAACA