Contig 012250:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010N24Sequence560012250 (4)ref|XP_004230497.1|7e-55PREDICTED: ankyrin repeat domain-containing protein 2 [Solanum lycopersicum]751012250 (4)gb|KJB79769.1|1e-109hypothetical protein B456_013G065700 [Gossypium raimondii]
JMSF014O12Sequence445012250 (4)ref|XP_004230497.1|1e-37PREDICTED: ankyrin repeat domain-containing protein 2 [Solanum lycopersicum]811012250 (4)gb|KJB79770.1|6e-123hypothetical protein B456_013G065700 [Gossypium raimondii]

Alignment

This contig is upended


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JMFF010N24-                                          CTTTTCACTTCGAAATCTCCAACTCTTGC
                      ____________________________________________________________
consensus                                            CTTTTCACTTCGAAATCTCCAACTCTTGC
 
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JMFF010N24-           AAAGAAGCGGAGCAGAACAGTTCGTCTCACTTCTACCTTCTTCTTCCTAAACCTCGCTTA
                      ____________________________________________________________
consensus             AAAGAAGCGGAGCAGAACAGTTCGTCTCACTTCTACCTTCTTCTTCCTAAACCTCGCTTA
 
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JMFF010N24-           CCATCCATGTCTAACGCGGAGAAATCTATGGCTACTCGCTCAAACGATGAGAAATCTGCA
                      ____________________________________________________________
consensus             CCATCCATGTCTAACGCGGAGAAATCTATGGCTACTCGCTCAAACGATGAGAAATCTGCA
 
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JMFF010N24-           ACAGCTGATAATAAGAAGTCTTCAGAATCTATTCCCACAGGGACACAATTGGGACCTGGA
                      ____________________________________________________________
consensus             ACAGCTGATAATAAGAAGTCTTCAGAATCTATTCCCACAGGGACACAATTGGGACCTGGA
 
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JMSF014O12-                          GCTGGACCTGGAATGGAAAATCCTTTTGATTTCTCGGCATTGTCT
JMFF010N24-           AATGCAAACCCTCTAGCTGGACCTGGAATGGAAAATCCTTTTGATTTCTCGGCATTGTCT
                      ____________________________________________________________
consensus             AATGCAAACCCTCTAGCTGGACCTGGAATGGAAAATCCTTTTGATTTCTCGGCATTGTCT
 
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JMSF014O12-           GGCCTCCTAAATGACCCGAGCATTAAAGGCCTAGCTGAACAGATAGCAAAAGATCCTTCA
JMFF010N24-           GGCCTCCTAAATGACCCGAGCATTAAAGGCCTAGCTGAACAGATAGCAAAAGATCCTTCA
                      ____________________________________________________________
consensus             GGCCTCCTAAATGACCCGAGCATTAAAGGCCTAGCTGAACAGATAGCAAAAGATCCTTCA
 
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JMSF014O12-           TTCACTGAAATGGCAGAG                                          
JMFF010N24-           TTCACTGAAATGGCAGAGAACCTTCAAAAGACCCTTCAGGGTGCGGCAGGTCTTGAAGAT
                      ____________________________________________________________
consensus             TTCACTGAAATGGCAGAGAACCTTCAAAAGACCCTTCAGGGTGCGGCAGGTCTTGAAGAT
 
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JMFF010N24-           GAGATTCCCCACTTTGATCCCCAGCAATACTACGCAACAGTGCAACAAGTTATGGAAAAT
                      ____________________________________________________________
consensus             GAGATTCCCCACTTTGATCCCCAGCAATACTACGCAACAGTGCAACAAGTTATGGAAAAT
 
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JMFF010N24-           CCTGAGTTTATAACAATGGCAGAGCGGCTTGGAAGCACATTGATGCAGGATCCAGCCATG
rJMSF014O12+                                                  TGATGCANGATCCAGCCATG
                      ____________________________________________________________
consensus             CCTGAGTTTATAACAATGGCAGAGCGGCTTGGAAGCACATTGATGCAGGATCCAGCCATG
 
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JMFF010N24-           TCCAGCATGCTCGAAAGTTTTTCAAATCCCGCTCAGACTGACCAACTTGAA         
rJMSF014O12+          TCCAGCATGCTCGAAAGTTTTTCAAATCCCGCTCAGACTGACCAACTTGAAGAAAGAATG
rJMFF010N24+                                                 GACCAACTTGAAGAAAGAATG
                      ____________________________________________________________
consensus             TCCAGCATGCTCGAAAGTTTTTCAAATCCCGCTCAGACTGACCAACTTGAAGAAAGAATG
 
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rJMSF014O12+          GCACACATCAAAGAAGATCCATCTTTGAAACCAATCCTGGAAGAGATAGAACGTGGGGGT
rJMFF010N24+          GCACACATCAAAGAAGATCCATCTTTGAAACCAATCCTGGAAGAGATAGAACGTGGGGGT
                      ____________________________________________________________
consensus             GCACACATCAAAGAAGATCCATCTTTGAAACCAATCCTGGAAGAGATAGAACGTGGGGGT
 
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rJMSF014O12+          CCGTCTGCAATGATGAGGTACTGGAATGATAAGGATGTTCTAAAGAAGTTGGGTGAAGCA
rJMFF010N24+          CCGTCTGCAATGATGAGGTACTGGAATGATAAGGATGTTCTAAAGAAGTTGGGTGAAGCA
                      ____________________________________________________________
consensus             CCGTCTGCAATGATGAGGTACTGGAATGATAAGGATGTTCTAAAGAAGTTGGGTGAAGCA
 
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rJMSF014O12+          ATGGGTTTTGCTGCTTCCGGGGAAACAGCCGCTTCCAATGAAACTGTCCCAGATGAAACT
rJMFF010N24+          ATGGGTTTTGCTGCTTCCGGGGAAACAGCCGCTTCCAATGAAACTGTCCCAGATGAAACT
                      ____________________________________________________________
consensus             ATGGGTTTTGCTGCTTCCGGGGAAACAGCCGCTTCCAATGAAACTGTCCCAGATGAAACT
 
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rJMSF014O12+          GAAGAAGAGAGTGAAGATGAATCAATTGTTCATCAGTGTGCTAGTGTTGGGGATGTGGAG
rJMFF010N24+          GAAGAAGAGAGTGAAGATGAATCAATTGTTCATCAGTGTGCTAGTGTTGGGGATGTGGAG
                      ____________________________________________________________
consensus             GAAGAAGAGAGTGAAGATGAATCAATTGTTCATCAGTGTGCTAGTGTTGGGGATGTGGAG
 
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rJMSF014O12+          GGCTTGAAGAAAGCACTTGCTTCTGGAGCTGATAAAGATGAAGAAGATTCTGAGGGAAGG
rJMFF010N24+          GGCTTGAAGAAAGCACTTGCTTCTGGAGCTGATAAAGATGAAGAAGATTCTGAGGGAAGG
                      ____________________________________________________________
consensus             GGCTTGAAGAAAGCACTTGCTTCTGGAGCTGATAAAGATGAAGAAGATTCTGAGGGAAGG
 
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rJMSF014O12+          ACGGCGCTGCATTTTGCATGTGGATATGGGGAGGATAAGTGTGCTCAGGTTCTTCTCGAG
rJMFF010N24+          ACGGCGCTGCATTTTGCATGTGGATATGGGGAGGATAAGTGTGCTCAGGTTCTTCTCGAG
                      ____________________________________________________________
consensus             ACGGCGCTGCATTTTGCATGTGGATATGGGGAGGATAAGTGTGCTCAGGTTCTTCTCGAG
 
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rJMSF014O12+          GCCGGGGCTAAGGTGGATGCTTTGGACAAGAATAAGAACACTGCTCTCCATTATGCTGCC
rJMFF010N24+          GCCGGGGCTAAGGTGGATGCTTTGGACAAGAATAAGAACACTGCTCTCCATTATGCTGCC
                      ____________________________________________________________
consensus             GCCGGGGCTAAGGTGGATGCTTTGGACAAGAATAAGAACACTGCTCTCCATTATGCTGCC
 
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rJMSF014O12+          GGATATGGAAGGAAGGGATGTGTTGCACTTCTGCTGGAGAACGGTGCTGCAGTCACTCTT
rJMFF010N24+          GGATATGGAAGGAAGGGATGTGTTGCACTTCTGCTGGAGAACGGTGCTGCAGTCACTCTT
                      ____________________________________________________________
consensus             GGATATGGAAGGAAGGGATGTGTTGCACTTCTGCTGGAGAACGGTGCTGCAGTCACTCTT
 
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rJMSF014O12+          CAAAACATGGATGGCAAGACGCCTATAGAAGTTGCCAAATTGAATGACCAGAGTGAAGTC
rJMFF010N24+          CAAAACATGGATGGCAAGACGCCTATAGAAGTTGCCAAATTGAATGACCAGAGTGAAGTC
                      ____________________________________________________________
consensus             CAAAACATGGATGGCAAGACGCCTATAGAAGTTGCCAAATTGAATGACCAGAGTGAAGTC
 
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rJMSF014O12+          CTAAAGCTTCTTGAGAAGGATGCGTTTCTATAA                           
rJMFF010N24+          CTAAAGCTTCTCGAGAAGGATGCGTTTCTATAAACTGAAAGCACTCGTGGACGGTTAAGT
                      ____________________________________________________________
consensus             CTAAAGCTTCTTGAGAAGGATGCGTTTCTATAAACTGAAAGCACTCGTGGACGGTTAAGT
 
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rJMFF010N24+          TGTGAGAGTGCAATTCTATTGGCCTATGTAATTTTCACAGAAAAATGGGTTTTTGAAACT
                      ____________________________________________________________
consensus             TGTGAGAGTGCAATTCTATTGGCCTATGTAATTTTCACAGAAAAATGGGTTTTTGAAACT
 
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rJMFF010N24+          CAACTCAGATGCATTGTCACATTGTGATATTCTGGTTCTGTGAATCATTTTCTGAAAAGT
                      ____________________________________________________________
consensus             CAACTCAGATGCATTGTCACATTGTGATATTCTGGTTCTGTGAATCATTTTCTGAAAAGT