Contig 012245:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008J18Sequence566012245 (2)ref|XP_007209377.1|2e-84hypothetical protein PRUPE_ppa008889mg [Prunus persica] gb|EMJ10576.1| hypotheti763012245 (2)ref|XP_011072846.1|4e-75PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Sesamum indicu

Alignment

This contig is upended


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JMFF008J18-              GTATAGATGAAGCCACAACGTAGTTCACAGTGTTGAATACGTAGTTTGATTCGTGAT
                      ____________________________________________________________
consensus                GTATAGATGAAGCCACAACGTAGTTCACAGTGTTGAATACGTAGTTTGATTCGTGAT
 
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JMFF008J18-           CAATTTTCTCAGAAACAAGAAATGTGGATTTTTGGGATAAAAGGGGAATCTGGGTTCTCA
                      ____________________________________________________________
consensus             CAATTTTCTCAGAAACAAGAAATGTGGATTTTTGGGATAAAAGGGGAATCTGGGTTCTCA
 
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JMFF008J18-           GCTTCATCAACAGCCGAAGAAGTTACCGAAGGGATTGATGGAACTGACCTCATTGCCATT
                      ____________________________________________________________
consensus             GCTTCATCAACAGCCGAAGAAGTTACCGAAGGGATTGATGGAACTGACCTCATTGCCATT
 
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JMFF008J18-           GTTACAGGAGCCTCGAGCGGCATTGGAGCAGAGACTGCCCGTGTCCTAGCCTTGCGTGGC
                      ____________________________________________________________
consensus             GTTACAGGAGCCTCGAGCGGCATTGGAGCAGAGACTGCCCGTGTCCTAGCCTTGCGTGGC
 
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JMFF008J18-           GTACATGTAATTATGGCAGTTCGCAATCTAGAAAGCGGTAGAGCAGTTGCAAGAAGAATA
                      ____________________________________________________________
consensus             GTACATGTAATTATGGCAGTTCGCAATCTAGAAAGCGGTAGAGCAGTTGCAAGAAGAATA
 
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JMFF008J18-           GTTAAAGAGACTCCTAATGCTAAAGTCAATGTCATGGAATTGGATCTTAGCTCCCTGGCG
                      ____________________________________________________________
consensus             GTTAAAGAGACTCCTAATGCTAAAGTCAATGTCATGGAATTGGATCTTAGCTCCCTGGCG
 
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JMFF008J18-           TCTGTTAGGAAGTTCGTGTCAGAATATAACGCCTCGGGTTTGCCCTTGAACCTCCTCATT
                      ____________________________________________________________
consensus             TCTGTTAGGAAGTTCGTGTCAGAATATAACGCCTCGGGTTTGCCCTTGAACCTCCTCATT
 
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JMFF008J18-           AATAATGCAGGGGTTATGGCTACGCCATTCATACTCTCACAAGACAACTTAGAGTTGCAA
rJMFF008J18+                           GGCTACGCCATTCATACTCTCACAAGACAACTTAGAGTTGCAA
                      ____________________________________________________________
consensus             AATAATGCAGGGGTTATGGCTACGCCATTCATACTCTCACAAGACAACTTAGAGTTGCAA
 
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JMFF008J18-           TTTGCAACTAATCACGTTGGTCATTTTCTTTTGACGAATCTATTGTT-GGAAAAGATGAA
rJMFF008J18+          TTTGCAACTAATCACGTTGGTCATTTTCTTTTGACGAATCTATTGTTGGGAAAAGATGAA
                      ____________________________________________________________
consensus             TTTGCAACTAATCACGTTGGTCATTTTCTTTTGACGAATCTATTGTTGGGAAAAGATGAA
 
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JMFF008J18-           ACGGACAGCTTATGAGTGCCGCAAAGAAGG                              
rJMFF008J18+          ACGGACAGCTTATGAGTGCCGCAAAGAAGGAAGGATTGTTAATGTTTCATCGAATGCGCA
                      ____________________________________________________________
consensus             ACGGACAGCTTATGAGTGCCGCAAAGAAGGAAGGATTGTTAATGTTTCATCGAATGCGCA
 
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rJMFF008J18+          TCAATTACCATACAGTGAAGGAATTCGTTTCAACAAAATTAATGATGAAAAAAGTTATAA
                      ____________________________________________________________
consensus             TCAATTACCATACAGTGAAGGAATTCGTTTCAACAAAATTAATGATGAAAAAAGTTATAA
 
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rJMFF008J18+          TAGAATATATGCTTATGGGCAATCGAAGCTCGCCAACATATTGCACGCTACTGAACTTGC
                      ____________________________________________________________
consensus             TAGAATATATGCTTATGGGCAATCGAAGCTCGCCAACATATTGCACGCTACTGAACTTGC
 
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rJMFF008J18+          AAGGCGCTTGATGGAAGAACGAGCACGGGTAACTGCAAATTCACTTCATCCTGGAGCAAT
                      ____________________________________________________________
consensus             AAGGCGCTTGATGGAAGAACGAGCACGGGTAACTGCAAATTCACTTCATCCTGGAGCAAT
 
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rJMFF008J18+          CGCCACCAATCTTCTGCGTCATAATGGTTTCTTCGATGGGATTGTTAACTGGATTGGGAA
                      ____________________________________________________________
consensus             CGCCACCAATCTTCTGCGTCATAATGGTTTCTTCGATGGGATTGTTAACTGGATTGGGAA
 
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rJMFF008J18+          ATACGTCATAAAAAACATCCCACAGGGCGCTGCAACTACGTGCTATGTCGCATTGCATCC
                      ____________________________________________________________
consensus             ATACGTCATAAAAAACATCCCACAGGGCGCTGCAACTACGTGCTATGTCGCATTGCATCC
 
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rJMFF008J18+          ACAGGTTGAAGGGCTAAGCGGCGAGTACTTTTGTGACAGCAACATTTCACAGCCGAGCTC
                      ____________________________________________________________
consensus             ACAGGTTGAAGGGCTAAGCGGCGAGTACTTTTGTGACAGCAACATTTCACAGCCGAGCTC
 
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rJMFF008J18+          GCTTGCTACCGATGCAGAGTTGGCGAAGAAACTTTGGGATTTCAGCTTGAATCTAACAAG
                      ____________________________________________________________
consensus             GCTTGCTACCGATGCAGAGTTGGCGAAGAAACTTTGGGATTTCAGCTTGAATCTAACAAG
 
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rJMFF008J18+          CCAGGAGCCAGTTTGAATGGATTTCATCTTCTTCTCCTCTCTTTATGCTTGCCTGTCTTT
                      ____________________________________________________________
consensus             CCAGGAGCCAGTTTGAATGGATTTCATCTTCTTCTCCTCTCTTTATGCTTGCCTGTCTTT
 
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rJMFF008J18+          TACCTTTTTCATTGCTAAGATTTCTGCTTTGGAATGTTGTGTCTGTCTGAAACTAATTGC
                      ____________________________________________________________
consensus             TACCTTTTTCATTGCTAAGATTTCTGCTTTGGAATGTTGTGTCTGTCTGAAACTAATTGC
 
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rJMFF008J18+          AGGATGAACTCTCTCTGTAGTGATTAGATTGTCCATCTTCATATCTCTGTTGAAGAAAAT
                      ____________________________________________________________
consensus             AGGATGAACTCTCTCTGTAGTGATTAGATTGTCCATCTTCATATCTCTGTTGAAGAAAAT