Contig 012238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006P19Sequence493012238 (4)ref|XP_011075483.1|2e-90PREDICTED: 40S ribosomal protein S9-2 [Sesamum indicum] ref|XP_011075484.1| PRED769012238 (4)ref|XP_011075483.1|6e-124PREDICTED: 40S ribosomal protein S9-2 [Sesamum indicum] ref|XP_011075484.1| PRED
JMFF025C15Sequence554004986 (6)ref|XP_011075483.1|2e-111PREDICTED: 40S ribosomal protein S9-2 [Sesamum indicum] ref|XP_011075484.1| PRED271012238 (4)
JMFN014H13Sequence584012238 (4)ref|XP_011075483.1|1e-120PREDICTED: 40S ribosomal protein S9-2 [Sesamum indicum] ref|XP_011075484.1| PRED

Alignment

This contig is upended


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JMFN014H13-                                TCAGAGCTGCAGAATTTAGCTTCCATTGCCGAACTGAGG
                      ____________________________________________________________
consensus                                  TCAGAGCTGCAGAATTTAGCTTCCATTGCCGAACTGAGG
 
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JMFN014H13-           TTCTTACCTCCGGCGGCCCAGCATGGTGCACGTTAACTTTTACCGAAACTATGGAAAGAC
JMFF006P19-                             CAGCATGGTGCACGTTAACTTTTACCGAAACTATGGAAAGAC
rJMFF006P19+                     GGCGGCCCAGCATGGTGCACGTTAACTTTTACCGAAACTATGGAAAGAC
                      ____________________________________________________________
consensus             TTCTTACCTCCGGCGGCCCAGCATGGTGCACGTTAACTTTTACCGAAACTATGGAAAGAC
 
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JMFN014H13-           ATTCAAGAAGCCTCGCCGTCCATATGAGAAAGAGCGTTTGGATGCTGAGTTGAAGCTTGT
JMFF006P19-           ATTCAAGAAGCCTCGCCGTCCATATGAGAAAGAGCGTTTGGATGCTGAGTTGAAGCTTGT
rJMFF006P19+          ATTCAAGAAGCCTCGCCGTCCATATGAGAAAGAGCGTTTGGATGCTGAGTTGAAGCTTGT
                      ____________________________________________________________
consensus             ATTCAAGAAGCCTCGCCGTCCATATGAGAAAGAGCGTTTGGATGCTGAGTTGAAGCTTGT
 
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JMFN014H13-           GGGTGAATATGGGCTTAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCG
JMFF006P19-           GGGTGAATATGGGCTTAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCG
rJMFF006P19+          GGGTGAATATGGGCTTAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCG
                      ____________________________________________________________
consensus             GGGTGAATATGGGCTTAGGTGCAAGAGGGAGCTTTGGAGAGTTCAGTATGCTTTGAGCCG
 
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JMFN014H13-           TATCCGAAATAATGCAAGAATGCTTCTAACCCTTGATGAGAAGGACCCACGCCGTATTTT
JMFF006P19-           TATCCGAAATAATGCAAGAATGCTTCTAACCCTTGATGAGAAGGACCCACGCCGTATTTT
rJMFF006P19+          TATCCGAAATAATGCAAGAATGCTTCTAACCCTTGATGAGAAGGACCCACGCCGTATTTT
                      ____________________________________________________________
consensus             TATCCGAAATAATGCAAGAATGCTTCTAACCCTTGATGAGAAGGACCCACGCCGTATTTT
 
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JMFN014H13-           TGAGGGTGATGCACTCCTGAGGAGGATGAATAGGTATGGCCTGCTGGATGAGAGCCAAAA
JMFF006P19-           TGAGGGTGATGCACTCCTGAGGAGGATGAATAGGTATGGCCTGCTGGATGAGAGCCAAAA
rJMFF006P19+          TGAGGGTGATGCACTCCTGAGGAGGATGAATAGGTATGGCCTGCTGGATGAGAGCCAAAA
                      ____________________________________________________________
consensus             TGAGGGTGATGCACTCCTGAGGAGGATGAATAGGTATGGCCTGCTGGATGAGAGCCAAAA
 
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JMFN014H13-           CAAGCTTGATTATGTCCTTGCCCTCACAGTGGAGAATTTCCTTGAGCGCCGTCTACAAAC
JMFF006P19-           CAAGCTTGATTATGTCCTTGCCCTCACAGTGGAGAATTTCCTTGAGCGCCGTCTACAGAC
rJMFF006P19+          CAAGCTTGATTATGTCCTTGCCCTCACAGTGGAGAATTTCCTTGAGCGCCGTCTACAGAC
                      ____________________________________________________________
consensus             CAAGCTTGATTATGTCCTTGCCCTCACAGTGGAGAATTTCCTTGAGCGCCGTCTACAGAC
 
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JMFN014H13-           TCTGGTGTTTAAGGCTGGCATGGCAAAGTCAATCCATCATGCAAGAGTTCTCATTAGGCA
JMFF006P19-           TCTGGTGTTTAAGGCTGGCATGGCAAAGTCAATCCATCATGCAAGAGTTCTCATTAGGCA
rJMFF006P19+          TCTGGTGTTTAAGGCTGGCATGGCAAAGTCAATCCATCATGCAAGAGTTCTCATTAGGCA
                      ____________________________________________________________
consensus             TCTGGTGTTTAAGGCTGGCATGGCAAAGTCAATCCATCATGCAAGAGTTCTCATTAGGCA
 
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JMFN014H13-           AAAGCACATCAGGGTTGGAAGACAGGTGGTCAATGTCCCATCCTTCATGGTCAGGGTCGA
JMFF006P19-           AAAGCACATCA                                                 
rJMFF006P19+          AAAGCACATCAGGGTTGGAAGACAGGTGGTCAATGTCCCATCCTTCATGGTCAGGGTCGA
                      ____________________________________________________________
consensus             AAAGCACATCAGGGTTGGAAGACAGGTGGTCAATGTCCCATCCTTCATGGTCAGGGTCGA
 
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JMFN014H13-           CTCTCAGAAGCACATCGATTTCTCACTATCCAGCCCATTCGGTGGTGGCCGACCTGGTAG
rJMFF025C15+                                               TTCGGTGGTGGACGCCCTGGCAG
rJMFF006P19+          CTCTCAGAAGCACATCGATTTCTCACTATCCAGCCCATTCGGTGGTGGCCGACCTGGTAG
                      ____________________________________________________________
consensus             CTCTCAGAAGCACATCGATTTCTCACTATCCAGCCCATTCGGTGGTGGCCGACCTGGTAG
 
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JMFN014H13-           AGTGA                                                       
rJMFF025C15+          AGTGAAGAGAAAGANCCAGAAGGCTGCCGCAAAGAAGGCTTCTGGGGGTGATGGTGATGA
rJMFF006P19+          AGTGAAGAGAAAGAACCAGAAGGCCGCTGCGAAGAAGGCGTCTGGTGGTGATGGAGATGA
                      ____________________________________________________________
consensus             AGTGAAGAGAAAGAACCAGAAGGCTGCTGCGAAGAAGGCTTCTGGTGGTGATGGTGATGA
 
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rJMFF025C15+          AGAGGATGAAGAATGAG                                           
rJMFF006P19+          AGAGGATGAAGAATGAGCTTGTTTCTTCTGTGTAGTAGGGTTTACCCTTTTTCCCCAATT
                      ____________________________________________________________
consensus             AGAGGATGAAGAATGAGCTTGTTTCTTCTGTGTAGTAGGGTTTACCCTTTTTCCCCAATT
 
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rJMFF006P19+          TGTTTGGAGGTTATTGCACCTTACTACCCTTTTGCCAAAAGCCCAAAACTCTCCGAGGTC
                      ____________________________________________________________
consensus             TGTTTGGAGGTTATTGCACCTTACTACCCTTTTGCCAAAAGCCCAAAACTCTCCGAGGTC
 
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rJMFF006P19+          TTATTGCACCTTACTACCCTTACAAGCTTTGAGTTTGGTTTTGTTTTTAACCTTTTCTGT
                      ____________________________________________________________
consensus             TTATTGCACCTTACTACCCTTACAAGCTTTGAGTTTGGTTTTGTTTTTAACCTTTTCTGT