| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006K10 | Sequence | 494 | 008736 (3) | ref|XP_006453595.1| | 6e-36 | hypothetical protein CICLE_v10008182mg [Citrus clementina] gb|ESR66835.1| hypoth | 748 | 012237 (3) | ref|XP_007011905.1| | 5e-117 | Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gb|EOY29524.1| Alpha |
| JMSF001G08 | Sequence | 423 | 008736 (3) | ref|XP_011018041.1| | 6e-54 | PREDICTED: serine carboxypeptidase 24-like isoform X2 [Populus euphratica] | 769 | 012237 (3) | ref|XP_009792407.1| | 4e-112 | PREDICTED: serine carboxypeptidase 24-like [Nicotiana sylvestris] |
| JMSF045F07 | Sequence | 784 | 008736 (3) | ref|XP_006343642.1| | 9e-134 | PREDICTED: serine carboxypeptidase 24-like [Solanum tuberosum] | 824 | 012237 (3) | ref|XP_007011905.1| | 6e-133 | Alpha/beta-Hydrolases superfamily protein [Theobroma cacao] gb|EOY29524.1| Alpha |
This contig is upended
. : . : . : . : . : . :
rJMSF045F07+ TGCGATGA
____________________________________________________________
consensus TGCGATGA
. : . : . : . : . : . :
rJMSF045F07+ TTTCAGNCAAGACATNTAAGAACNTCCTAAATTCATGCAACTTCACATCAGATAAATCTT
____________________________________________________________
consensus TTTCAGNCAAGACATNTAAGAACNTCCTAAATTCATGCAACTTCACATCAGATAAATCTT
. : . : . : . : . : . :
rJMSF045F07+ CAAAGAAGTGCGATGACATTGTGGATTATGCCATGAACCATGAATTTGGGGACATTGATC
rJMSF001G08+ GTGCGATGACATTGTGGATTATGCCATGAACCATGAA-TTNGGGACATTGATC
rJMFF006K10+ GGGACATTGATC
____________________________________________________________
consensus CAAAGAAGTGCGATGACATTGTGGATTATGCCATGAACCATGAATTTGGGGACATTGATC
. : . : . : . : . : . :
rJMSF045F07+ AGTATAGTATATATACACCAACATGCAAGGTAGCACAGAATAGTACCCTCATAAGGGTCA
rJMSF001G08+ AGTATAGTATATATACACCAACATGCAAGGTAGCACAGAATAGTACCCTCATAAGGGTCA
rJMFF006K10+ AGTATAGTATATATACACCAACATGCAAGGTAGCACAGAATAGTACCCTCATAAGGGTCA
____________________________________________________________
consensus AGTATAGTATATATACACCAACATGCAAGGTAGCACAGAATAGTACCCTCATAAGGGTCA
. : . : . : . : . : . :
rJMSF045F07+ AGAACACCCTTATACACCGAAGATTCTCAGGCTATGATCCATGCACTGAGAATTATGCAG
rJMSF001G08+ AGAACACCCTTATACACCGAAGATTCTCAGGCTATGATCCATGCACTGAGAATTATGCAG
rJMFF006K10+ AGAACACCCTTATACACCGAAGATTCTCAGGCTATGATCCATGCACTGAGAATTATGCAG
____________________________________________________________
consensus AGAACACCCTTATACACCGAAGATTCTCAGGCTATGATCCATGCACTGAGAATTATGCAG
. : . : . : . : . : . :
rJMSF045F07+ AAAAATACTATAACCGGCCAGATGTACAGAAAGCCCTGCATGCAAACACTACAGGAATTC
rJMSF001G08+ AAAAATACTATAACCGGCCAGATGTACAGAAAGCCCTGCATGCAAACACTACAGGAATTC
rJMFF006K10+ AAAAATACTATAACCGGCCAGATGTACAGAAAGCCCTGCATGCAAACACTACAGGAATTC
____________________________________________________________
consensus AAAAATACTATAACCGGCCAGATGTACAGAAAGCCCTGCATGCAAACACTACAGGAATTC
. : . : . : . : . : . :
rJMSF045F07+ CTTACAAATGGACTGCTTGCAGCGAAGTATTGATAAAGAACTGGAAGGATTCTGAATTCT
rJMSF001G08+ CTTACAAATGGACTGCTTGCAGCGAAGTATTGATAAAGAACTGGAAGGATTCTGAATTCT
rJMFF006K10+ CTTACAAATGGACTGCTTGCAGCGAAGTATTGATAAAGAACTGGAAGGATTCTGAATTCT
____________________________________________________________
consensus CTTACAAATGGACTGCTTGCAGCGAAGTATTGATAAAGAACTGGAAGGATTCTGAATTCT
. : . : . : . : . : . :
rJMSF045F07+ CAGTCCTACCAACATACAGGAAGCTAATGGCTGCTGGTCTTAGAATCTGGGTTTTCAGTG
rJMSF001G08+ CAGTCCTACCAACATACAGGAAGCTAATGGCTGCTGGTCTTAGAATCTGGGTTTTCAGTG
rJMFF006K10+ CAGTCCTACCAACATACAGGAAGCTAATGGCTGCTGGTCTTAGAATCTGGGTTTTCAGTG
____________________________________________________________
consensus CAGTCCTACCAACATACAGGAAGCTAATGGCTGCTGGTCTTAGAATCTGGGTTTTCAGTG
. : . : . : . : . : . :
rJMSF045F07+ GAGATACAGATTCAGTGGTTCCTGTGACAGCCACAAGGTTCTCTCTCAGCCATCTCAATC
rJMSF001G08+ GAGATACAGATTCAGTGGTTCCTGTGACAGCCACAAGGTTCTCTCTCAGCCATCTCAATC
rJMFF006K10+ GAGATACAGATTCAGTGGTTCCTGTGACAGCCACAAGGTTCTCTCTCAGCCATCTCAATC
____________________________________________________________
consensus GAGATACAGATTCAGTGGTTCCTGTGACAGCCACAAGGTTCTCTCTCAGCCATCTCAATC
. : . : . : . : . : . :
rJMSF045F07+ TCAAAATTAAAACTCAATGGTACCCCTGGTACTCCGGTGGACAGGTTGGAGGATGGACAG
rJMSF001G08+ TCAAAATTAAAACTCAATGGTACCCCTGGTACTCCGGTGGACAGGTTGGAGGATGGACAG
rJMFF006K10+ TCAAAATTAAAACTCAATGGTACCCCTGGTACTCCGGTGGACAGGTTGGAGGATGGACAG
____________________________________________________________
consensus TCAAAATTAAAACTCAATGGTACCCCTGGTACTCCGGTGGACAGGTTGGAGGATGGACAG
. : . : . : . : . : . :
rJMSF045F07+ AGGTGTATGATGGACTCACCTTTGCCACAGTCAGAGGAGCTGGCCATGAAGTACCTCTAT
rJMSF001G08+ AGGTGTATGATGGACTCACCTTTGCCACAGTCAGAGGAGCTGGCCATGAAGTACCTCTAT
rJMFF006K10+ AGGTGTATGATGGACTCACCTTTGCCACAGTCAGAGGAGCTGGCCATGAAGTACCTCTAT
____________________________________________________________
consensus AGGTGTATGATGGACTCACCTTTGCCACAGTCAGAGGAGCTGGCCATGAAGTACCTCTAT
. : . : . : . : . : . :
rJMSF045F07+ TTCAACCAAGGAGAGCTTTTATACTTTTCCAATCATTCTTGGCTGGCAAAGAATTACCAA
rJMSF001G08+ TTCAACCAAGGAGAGCTTTTATACTTTTCCAATCATTCTTGGCTGGCAAAGAATTACCAA
rJMFF006K10+ TTCAACCAAGGAGAGCTTTTATACTTTTCCAATCATTCTTGGCTGGCAAAGAATTACCAA
____________________________________________________________
consensus TTCAACCAAGGAGAGCTTTTATACTTTTCCAATCATTCTTGGCTGGCAAAGAATTACCAA
. : . : . : . : . : . :
rJMSF045F07+ GATCTTGACAAGTATGACGAATGGTAGCAATGCTCAGAAGGAGCGACAGAATGCAGCCTG
rJMSF001G08+ GATCTTGACAAGTATGACGAATGGTAGCAATGCTCAGAAGGAGCGACAGAATGCAGCCTG
rJMFF006K10+ GATCTTGACAAGTATGACGAATGGTAGCAATGCTCAGAAGGAGCGACAGAATGCAGCCTG
____________________________________________________________
consensus GATCTTGACAAGTATGACGAATGGTAGCAATGCTCAGAAGGAGCGACAGAATGCAGCCTG
. : . : . : . : . : . :
rJMSF045F07+ AGGTGGATGCAATTCATTGGTCCCATGAAAGTTATGGGACTAGCAAAGTAGAACAAAATT
rJMSF001G08+ AGGTGGATGCAATTCATTGGTCCCATGAAAGTTATGGGACTAGCAAAGTAGAACAAAATT
rJMFF006K10+ AGGTGGATGCAATTCATTGGTCCCATGAAAGTTATGGGACTAGCAAAGTAGAACAAAATT
____________________________________________________________
consensus AGGTGGATGCAATTCATTGGTCCCATGAAAGTTATGGGACTAGCAAAGTAGAACAAAATT
. : . : . : . : . : . :
rJMSF045F07+ CATTCATTTCAATTTGTATTAGAATGAACCATCATA
rJMSF001G08+ CATTCATTTCAATTTGTATTAGAATGAACCATCATAATTTTATAAAAGAAATGACTC
rJMFF006K10+ CATTCATTTCAATTTGTATTAGAATGAACCATCATAATTTTATAAAAGAAATGACTCTTA
____________________________________________________________
consensus CATTCATTTCAATTTGTATTAGAATGAACCATCATAATTTTATAAAAGAAATGACTCTTA