Contig 012236:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006J13Sequence327003143 (3)ref|XP_011097618.1|8e-34PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like772012236 (4)ref|XP_010319762.1|1e-97PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isof
JMFF018E04Sequence573003143 (3)ref|XP_011097618.1|2e-93PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like830012236 (4)ref|XP_009779142.1|4e-96PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Nic
JMFF033I05Sequence600012236 (4)ref|XP_010319762.1|8e-112PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isof
JMSF019A06Sequence331003143 (3)ref|XP_011097618.1|3e-40PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like774012236 (4)ref|XP_010319762.1|4e-117PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial isof

Alignment

This contig is upended


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rJMFF018E04+                                                             ATTCAGGGA
                      ____________________________________________________________
consensus                                                                ATTCAGGGA
 
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rJMSF019A06+                                                     TTATGATATTGTTCGCA
rJMFF018E04+          GTCGGGGAGCAGTTGAATTAGCACCCGGATACTTGAAGCTGGTTTATGATATTGTTCGCA
                      ____________________________________________________________
consensus             GTCGGGGAGCAGTTGAATTAGCACCCGGATACTTGAAGCTGGTTTATGATATTGTTCGCA
 
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rJMFF033I05+                  GGTGTGTGCATAGCTGATGAAGTACAAACTGGTTTTGGTCGTA-CTGGTAGC
rJMSF019A06+          AGGCTGGAGGTGTGTGCATAGCTGATGAAGTACAAACTGGTTTTGGTCGTA-CTGGTAGC
rJMFF018E04+          AGGCTGGAGGTGTGTGCATAGCTGATGAAGTACAAACTGGTTTTGGTCGTA-CTGGTAGC
rJMFF006J13+                  GGTGTGTGCATAGCTGATGAAGTACAAACTGGTTTTGGTCGTACCTGGTAGC
                      ____________________________________________________________
consensus             AGGCTGGAGGTGTGTGCATAGCTGATGAAGTACAAACTGGTTTTGGTCGTA-CTGGTAGC
 
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rJMFF033I05+          CACTATTGGGGTTTCCAGACACAAGGCGTTGTTCCTGACATTGTCACCATGGCAAAGGGA
rJMSF019A06+          CACTATTGGGGTTTCCAGACACAAGGCGTTGTTCCTGACATTGTCACCATGGCAAAGGGA
rJMFF018E04+          CACTATTGGGGTTTCCAGACACAAGGCGTTGTTCCTGACAT--TCACCATGGCAAAGGGA
rJMFF006J13+          CACTATTGGGGTTTCCAGACACAAGGCGTTGTTCCTGACATTGTCACCATGGCAAAGGGA
                      ____________________________________________________________
consensus             CACTATTGGGGTTTCCAGACACAAGGCGTTGTTCCTGACATTGTCACCATGGCAAAGGGA
 
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rJMFF033I05+          ATCGGCAATGGCTTACCTCTTGGGGCGGTTGTGACCACACCAGAAATAGCCAGTGTGATG
rJMSF019A06+          ATCGGCAATGGCTTACCTCTTGGGGCGGTTGTGACCACACCAGAAATAGCCAGTGTGATG
rJMFF018E04+          ATCGGCAATGGCTTACCTCTTGGGGCGGTTGTGACCACACCAGAAATAGCCAGTGTGATG
rJMFF006J13+          ATCGGCAATGGCTTACCTCTTGGAGCGGTTGTGACCACACCAGAAATAGCCAGTGTGATG
                      ____________________________________________________________
consensus             ATCGGCAATGGCTTACCTCTTGGGGCGGTTGTGACCACACCAGAAATAGCCAGTGTGATG
 
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rJMFF033I05+          GCTCAAAAGATACAGTTTAATACTTTCGGTGGCAACCCCGTATGCTCTGCAGGTGGACAT
rJMSF019A06+          GCTCAAAAGATACAGTTTAATACTTTCGGTGGCAACCCCGTATGCTCTGCAGGTGGACAT
rJMFF018E04+          GCTCAAAAGATACAGTTTAATACTTTCGGTGGCAACCCCGTATGCTCTGCAGGTGGACAT
rJMFF006J13+          GCTCAAAAGATACAGTTTAATACTTTCGGTGGCAACCCCGTATGCTCTGCAGGTGGACAT
                      ____________________________________________________________
consensus             GCTCAAAAGATACAGTTTAATACTTTCGGTGGCAACCCCGTATGCTCTGCAGGTGGACAT
 
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rJMFF033I05+          GCAGTGCTTAAAGTTATTGACAAGGAGGAACGTCAAAAGCATTGTGCTGAAGTTGGCTCT
rJMSF019A06+          GCAGTGCTTAAAGTTATTGACAAGGAGGAACGTCAAAAGCATTGTGCTGAAGTTGGCTCT
rJMFF018E04+          GCAGTGCTTAAAGTTATTGACAAGGAGGAACGTCAAAAGCATTGTGCTGAAGTTGGCTCT
rJMFF006J13+          GCAGTGCTTAAAGTTATTGACAAGGAGGAACGTCAAAAGCATTGTGCTGAAGTTGGCTCT
                      ____________________________________________________________
consensus             GCAGTGCTTAAAGTTATTGACAAGGAGGAACGTCAAAAGCATTGTGCTGAAGTTGGCTCT
 
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rJMFF033I05+          CATTTGATTGGACGCCTGCGAGATTTACAACAAAAACATGACATAATTGGAGATGTGAGA
rJMSF019A06+          CATTTGATTGGACGCCTGCGAGATTTACAACAAAAACATGACATAATTGGAGATGTGAGA
rJMFF018E04+          CATTTGATTGGACGCCTGCGAGATTTACAACAAAAACATGACATAATTGGAGATGTGAGA
rJMFF006J13+          CATTTGATTGGACGCCTGCGAGATTTACAACAAAAACATGACATAATTGGAGATGTGAGA
                      ____________________________________________________________
consensus             CATTTGATTGGACGCCTGCGAGATTTACAACAAAAACATGACATAATTGGAGATGTGAGA
 
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rJMFF033I05+          GGCAGGGGGTTGATGGTGGGAATTGAGCTAGTGAGCGACAGGAAACTGAAGACACCTGCC
rJMSF019A06+          GGCAGGGGGTTGATGGTGGGAATTGAGCTAGTGAGCGACAGGAAACTGAAGACACCTGCC
rJMFF018E04+          GGCAGGGGGTTGATGGTGGGAATTGAGCTAGTGAGCGACAGGAAACTGAAGACACCTGCC
rJMFF006J13+          GGCAGGGTGTTGATGGTGGGAATTGAGCTAGTGAGCGACAGGAAACTGAAGACACCTGCC
                      ____________________________________________________________
consensus             GGCAGGGGGTTGATGGTGGGAATTGAGCTAGTGAGCGACAGGAAACTGAAGACACCTGCC
 
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rJMFF033I05+          AAGGCGGAAACTGGAGTTGTGTTTGAGAAGCTCAGAGAGCTCGGGGTTCTAGTTGGAAAA
rJMSF019A06+          AAGGCGGAAACTGGAGTTGTGTTTGAGAAGCTCAGAGAGCTCGGGGTTCTAGTTGGAAAA
rJMFF018E04+          AAGGCGGAAACTGGAGTTGTGTTTGAGAAGCTCAGAGAGCTCGGGGTTCTAGTTGGAAAA
rJMFF006J13+          AAGGCGGAAACTGGAGTTGTGTTTGAGAAGCTCAGAGAGCTCGGGGTTCTAGTTGGAAAA
                      ____________________________________________________________
consensus             AAGGCGGAAACTGGAGTTGTGTTTGAGAAGCTCAGAGAGCTCGGGGTTCTAGTTGGAAAA
 
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rJMFF033I05+          GGTGGTCTACATGGAAACGTTTTCAGAATAAAGCCTCCGATGTGCTTCACCAAAGACGAT
rJMSF019A06+          GGTGGTCTACATGGAAACGTTTTCAGAATAAAGCCTCCGATGTGCTTCACCAAAGACGAT
rJMFF018E04+          GGTGGTCTACATGGAAACGTTTTCAGAATAAAGCCTCCGATGTGCTCCACCAAAGACGAT
rJMFF006J13+          GGTGGTCTACATGGAAACGTTTTCAGAATAAAGCCTCCGATGTGCTTCACCAAAGACGAT
                      ____________________________________________________________
consensus             GGTGGTCTACATGGAAACGTTTTCAGAATAAAGCCTCCGATGTGCTTCACCAAAGACGAT
 
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rJMFF033I05+          GCAGATTTCCTAGTCGATGCACTGGACTATGGCATCTCAAAGCTGTGAGTGTTTAGATGA
rJMSF019A06+          GCAGATTTCCTAGTCGATGCACTGGACTATGGCATCTCAAAGCTGTGAGTGTTTAGATGA
rJMFF018E04+          GCAGATTTCCTAGTCGATGCACTGGACTATGGCATCTCAAAGCTGTGAGTGTTTAGATGA
rJMFF006J13+          GCAGATTTCCTAGTCGATGCACTGGACTATGGCATCTCAAAGCTGTGAGTGTTTAGATGA
                      ____________________________________________________________
consensus             GCAGATTTCCTAGTCGATGCACTGGACTATGGCATCTCAAAGCTGTGAGTGTTTAGATGA
 
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rJMFF033I05+          CGAAAAT                                                     
rJMSF019A06+          CGAAAATCCAAATCCAGGTTTTGCTTCGACACCATTGATGCAGTTGTGAAGTGCAATAAG
rJMFF018E04+          CGAAAATCCAAATCCAGGTTTTGCTTCGACACCATTGATGCAGTTGTGAAGTGCAATAAG
rJMFF006J13+          CGAAAATCCAAATCCAGGTTTTGCTTCGACACCATTGATGCAGTTGTGAAGTGCAATAAG
                      ____________________________________________________________
consensus             CGAAAATCCAAATCCAGGTTTTGCTTCGACACCATTGATGCAGTTGTGAAGTGCAATAAG
 
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rJMSF019A06+          ATTGTCTGAACAGAAGCAGAAAATGCAAATTCAAAGTTATAGCTTCTGTATTCAATATCA
rJMFF018E04+          ATTGTCTGAACAGAAGCAGAAAATGCAAATTCAAAGTTATAGCTTCTGTATTCAATATCA
rJMFF006J13+          ATTGTCTGAACAGAAGCAGAAAATGCAAATTCAAAGTTATAGCTTCTGTATTCAATATCA
                      ____________________________________________________________
consensus             ATTGTCTGAACAGAAGCAGAAAATGCAAATTCAAAGTTATAGCTTCTGTATTCAATATCA
 
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rJMSF019A06+          AGTGGATTAAC                                                 
rJMFF018E04+          AGTGGATTAAC                                                 
rJMFF006J13+          AGTGGATTAACAGGGAAAAACCATGAAATGAAAACACCAATCTATTAAGTTTTCGATGCA
                      ____________________________________________________________
consensus             AGTGGATTAACAGGGAAAAACCATGAAATGAAAACACCAATCTATTAAGTTTTCGATGCA