| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004F22 | Sequence | 417 | 003064 (2) | ref|XP_009590179.1| | 3e-29 | PREDICTED: protein trichome birefringence-like 41 [Nicotiana tomentosiformis] | 785 | 012224 (3) | ref|XP_009804652.1| | 8e-127 | PREDICTED: protein trichome birefringence-like 41 isoform X2 [Nicotiana sylvest |
| JMFF004K16 | Sequence | 604 | 003064 (2) | ref|XP_009804651.1| | 1e-70 | PREDICTED: protein trichome birefringence-like 41 isoform X1 [Nicotiana sylvest | 762 | 012224 (3) | ref|XP_009804652.1| | 3e-108 | PREDICTED: protein trichome birefringence-like 41 isoform X2 [Nicotiana sylvest |
| JMSF028A21 | Sequence | 651 | 021078 | dbj|BAH58100.1| | 3e-37 | Dof zinc finger protein [Ipomoea batatas] | 590 | 012224 (3) | ref|XP_009804652.1| | 7e-87 | PREDICTED: protein trichome birefringence-like 41 isoform X2 [Nicotiana sylvest |
This contig is upended
. : . : . : . : . : . :
rJMFF004F22+ TATGATGTGAAAGTAATGCTGGACCGCAGTGTGTATT
____________________________________________________________
consensus TATGATGTGAAAGTAATGCTGGACCGCAGTGTGTATT
. : . : . : . : . : . :
rJMFF004F22+ TGGTGGATGTTGTTAGGGAAGAGAAGGGGAGAATCTTAAAACTAGACT-CCATTGAAGGA
rJMFF004K16+ GGGGAGAATCTTAAAACTAGACTCCCATTGAAGGA
____________________________________________________________
consensus TGGTGGATGTTGTTAGGGAAGAGAAGGGGAGAATCTTAAAACTAGACTCCCATTGAAGGA
. : . : . : . : . : . :
rJMFF004F22+ GGGAAGCTATGGAATGGAATAGATATGCTAATCTTCAACACATGGCATTGGTGGAACCGC
rJMFF004K16+ GGGAAGCTATGGAATGGAATAGATATGCTAATCTTCAACACATGGCATTGGTGGAACCGC
____________________________________________________________
consensus GGGAAGCTATGGAATGGAATAGATATGCTAATCTTCAACACATGGCATTGGTGGAACCGC
. : . : . : . : . : . :
rJMSF028A21+ ATGGGATTACATCAAAATCGGAGACCAATACTATAAAGACATG
rJMFF004F22+ AGAGGAGTCACCCAACCATGGGATTACATCAAAATCGGAGACCAATACTATAAAGACATG
rJMFF004K16+ AGAGGAGTCACCCAACCATGGGATTACATCAAAATCGGAGACCAATACTATAAAGACATG
____________________________________________________________
consensus AGAGGAGTCACCCAACCATGGGATTACATCAAAATCGGAGACCAATACTATAAAGACATG
. : . : . : . : . : . :
rJMSF028A21+ GATCGTGTGGTTGCTTTCGAGAGGGCACTACTTACATGGGCTAGTTGGGTGGACGCCAAT
rJMFF004F22+ GATCGTGTGGTTGCTTTCGAGAGGGCACTACTTACATGGGCTAGTTGGGTGGACGCCAAT
rJMFF004K16+ GATCGTGTGGTTGCTTTCGAGAGGGCACTACTTACATGGGCTAGTTGGGTGGACGCCAAT
____________________________________________________________
consensus GATCGTGTGGTTGCTTTCGAGAGGGCACTACTTACATGGGCTAGTTGGGTGGACGCCAAT
. : . : . : . : . : . :
rJMSF028A21+ ATTGATCCTTCCAAAACAATGGTTTTCTTCCAAGGCATTTCCCCGTCACATTACAATGGC
rJMFF004F22+ ATTGATCCTTCCAAAACAATGGTTTTCTTCCAAGGCATTTCCCCGTCACATTACAATGGC
rJMFF004K16+ ATTGATCCTTCCAAAACAATGGTTTTCTTCCAAGGCATTTCCCCGTCACATTACAATGGC
____________________________________________________________
consensus ATTGATCCTTCCAAAACAATGGTTTTCTTCCAAGGCATTTCCCCGTCACATTACAATGGC
. : . : . : . : . : . :
rJMSF028A21+ ACGGATTGGAACGAACCGGGGGTTAAAAATTGCTTAGGACAGAAGCTGCCGTTGAGTGGC
rJMFF004F22+ ACGGATTGGAACGAACCGGGGGTTAAAAATTGCTTAGGACAGAAGCTGCCGTTGAGTGGC
rJMFF004K16+ ACGGATTGGAACGAACCGGGGGTTAAAAATTGCTTAGGACAGAAGCTGCCGTTGAGTGGC
____________________________________________________________
consensus ACGGATTGGAACGAACCGGGGGTTAAAAATTGCTTAGGACAGAAGCTGCCGTTGAGTGGC
. : . : . : . : . : . :
rJMSF028A21+ TCAACATATCCCGGAGGTTTGCCCCCTGCATTGACCGTGCTGAAGAGAGTACTGAGAACA
rJMFF004F22+ TCAACATATCCCGGAGGTTTGCCCCCTGCATTGACCGTGCTGAAGAGAGTACTGAGAACA
rJMFF004K16+ TCAACATATCCCGGAGGTTTGCCCCCTGCATTGACCGTGCTGAAGAGAGTACTGAGAACA
____________________________________________________________
consensus TCAACATATCCCGGAGGTTTGCCCCCTGCATTGACCGTGCTGAAGAGAGTACTGAGAACA
. : . : . : . : . : . :
rJMSF028A21+ ATAGAGAAGCCTGTTACATTGCTTGATGTCACAAACCTGTCGTTATTGCGAAAAGACGGG
rJMFF004F22+ ATAGAGAAGCCTGTTACATTGCTTGATGTCACAAACCTGTCGTTATTGCGAAAAGACGGG
rJMFF004K16+ ATAGAGAAGCCTGTTACATTGCTTGATGTCACAAACCTGTCGTTATTGCGAAAAGACGGG
____________________________________________________________
consensus ATAGAGAAGCCTGTTACATTGCTTGATGTCACAAACCTGTCGTTATTGCGAAAAGACGGG
. : . : . : . : . : . :
rJMSF028A21+ CACCCTTCGATGTATGGGCTCGGGGGAAGAACAGGAATGGATTGCAGCCATTGGTGTCTA
rJMFF004F22+ CACCCTTCGATGTATGGGCTCGGGGGAAGAACAGGAATGGATTGCAGCCATTGGTGTCTA
rJMFF004K16+ CACCCTTCGATGTATGGGCTCGGGGGAAGAACAGGAATGGATTGCAGCCATTGGTGTCTA
____________________________________________________________
consensus CACCCTTCGATGTATGGGCTCGGGGGAAGAACAGGAATGGATTGCAGCCATTGGTGTCTA
. : . : . : . : . : . :
rJMSF028A21+ GCTGGAGTTCCTGATACTTGGAATGAAATACTCTACAACATTATTCTTTAAATGATTTTA
rJMFF004F22+ GCTGGAGTTCCTGATACTTGGAATGAAATACTCTACAACATTATTCTTTAAATGATTTTA
rJMFF004K16+ GCTGGAGTTCCTGATACTTGGAATGAAATACTCTACAACATTATTCTTTAAATGATTTTA
____________________________________________________________
consensus GCTGGAGTTCCTGATACTTGGAATGAAATACTCTACAACATTATTCTTTAAATGATTTTA
. : . : . : . : . : . :
rJMSF028A21+ TACCGAGAAGTGAGAACTACTATATTAATTCTTACATTTTCTTGATTCTACTTTGTAATA
rJMFF004F22+ TACCGAGAAGTGAGAACTACTATATTAATTCTTACATTTTCTTGATTCTACTTTGTAATA
rJMFF004K16+ TACCGAGAAGTGAGAACTACTATATTAATTCTTACATTTTCTTGATTCTACTTTGTAATA
____________________________________________________________
consensus TACCGAGAAGTGAGAACTACTATATTAATTCTTACATTTTCTTGATTCTACTTTGTAATA
. : . : . : . : . : . :
rJMSF028A21+ TTACTAGAACAGATGAAAATTGGTCAGCCCCTAATGGCAACCATTGACAAATTGTATTTC
rJMFF004F22+ TTACTAGAACAGATGAAAATTGGTCAGCCCCTAATGGCAA-CATTGACAAATTGTATTTC
rJMFF004K16+ TTACTAGAACAGATGAAAATTGGTCAGCCCCTAATGGCAA-CATTGACAAATTGTATTTC
____________________________________________________________
consensus TTACTAGAACAGATGAAAATTGGTCAGCCCCTAATGGCAA-CATTGACAAATTGTATTTC
. : . : . : . : . : . :
rJMSF028A21+ AGAT
rJMFF004F22+ AGATTCTGGGCAAATGAAAAGACAGCAAAT
rJMFF004K16+ AGATTCTGGGCAAATGAAAAGACAGCAAATGGTTACAGAGTTTAACCTGGAAAACAAGAT
____________________________________________________________
consensus AGATTCTGGGCAAATGAAAAGACAGCAAATGGTTACAGAGTTTAACCTGGAAAACAAGAT