| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP006A11 | Sequence | 493 | 012223 (10) | gb|KHN41746.1| | 1e-34 | hypothetical protein glysoja_003486 [Glycine soja] | |||||
| JMCP008B09 | Sequence | 495 | 012223 (10) | gb|KHN41746.1| | 1e-34 | hypothetical protein glysoja_003486 [Glycine soja] | |||||
| JMCP008G10 | Sequence | 538 | 012223 (10) | gb|KHN41746.1| | 2e-34 | hypothetical protein glysoja_003486 [Glycine soja] | |||||
| JMCP017C02 | Sequence | 470 | 012223 (10) | gb|KHN41746.1| | 8e-35 | hypothetical protein glysoja_003486 [Glycine soja] | |||||
| JMCP018D10 | Sequence | 269 | 012223 (10) | gb|AFK45486.1| | 4e-34 | unknown [Lotus japonicus] | |||||
| JMFF004H22 | Sequence | 622 | 012223 (10) | gb|KHN41746.1| | 4e-34 | hypothetical protein glysoja_003486 [Glycine soja] | |||||
| JMFF044L01 | Sequence | 618 | 012223 (10) | gb|KHN41746.1| | 4e-34 | hypothetical protein glysoja_003486 [Glycine soja] | 509 | 012223 (10) | gb|KHN41746.1| | 2e-18 | hypothetical protein glysoja_003486 [Glycine soja] |
| JMSF015M15 | Sequence | 475 | 012223 (10) | gb|KHN41746.1| | 8e-35 | hypothetical protein glysoja_003486 [Glycine soja] | 436 | 012223 (10) | gb|KHN41746.1| | 5e-35 | hypothetical protein glysoja_003486 [Glycine soja] |
This contig is upended
. : . : . : . : . : . :
rJMFF044L01- GCCCTTATGGCGGATCACCCTGGTGAGT
____________________________________________________________
consensus GCCCTTATGGCGGATCACCCTGGTGAGT
. : . : . : . : . : . :
rJMFF044L01- TTTTTTTTTTTTTTGXXXXXXXXXXXXXXXXXXXXXXXXXGATAGAATTCATTACTGAAA
____________________________________________________________
consensus TTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNGATAGAATTCATTACTGAAA
. : . : . : . : . : . :
rJMFF044L01- CAATTTATTAAACTTTTAATTTCTTCATCATTTCAAGAAGGGGAGGAGAGTTCAGGCGGC
rJMCP008G10+ CATTTCAAGAAGGGGAGGAGAGTTCAGGCGGC
JMFF044L01+ AGGGGAGGAGAGTTCAGGCGGC
rJMFF004H22- AGGGGAGGAGAGTTCAGGCGGC
____________________________________________________________
consensus CAATTTATTAAACTTTTAATTTCTTCATCATTTCAAGAAGGGGAGGAGAGTTCAGGCGGC
. : . : . : . : . : . :
rJMFF044L01- TCGCAGGTTGTTTCTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
rJMCP008G10+ TCGCAGGTTGTTTCTTCGTCAAAAGAAACAAGATC-TTTTTTTCCATAATTATTGATATC
rJMCP008B09+ CTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
rJMCP006A11+ CGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
JMSF015M15+ CTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
JMCP017C02+ AAACAAGATCTTTTTTTTCCATAATTATTGATATC
rJMSF015M15- TTGATATC
JMFF044L01+ TCGCAGG-TGTTTCTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
rJMFF004H22- TCGCAGGTTGTTTCTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
____________________________________________________________
consensus TCGCAGGTTGTTTCTTCGTCAAAAGAAACAAGATCTTTTTTTTCCATAATTATTGATATC
. : . : . : . : . : . :
rJMFF044L01- AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
rJMCP008G10+ AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
rJMCP008B09+ AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
rJMCP006A11+ AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
JMSF015M15+ AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
JMCP017C02+ AAATAGTCACAAACATCTGTCCTTTCGCATAGTCACTATAATATAGTCACTATAAGTAGA
rJMSF015M15- AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
JMFF044L01+ AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
rJMFF004H22- AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
____________________________________________________________
consensus AAATAGTCACAAACATCTGTCCTTTCACATAGTCACTATAATATAGTCACTATAAGTAGA
. : . : . : . : . : . :
rJMFF044L01- AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
rJMCP008G10+ AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
rJMCP008B09+ AAAAGTCAAACTTCGTACAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
rJMCP006A11+ AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
JMSF015M15+ AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
JMCP017C02+ AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
rJMSF015M15- AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
JMFF044L01+ AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
rJMFF004H22- AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
____________________________________________________________
consensus AAAAGTCAAACTTCGTTCAGACCACTCAACCATCAACAACTGTATTCATTCACTCAAACT
. : . : . : . : . : . :
rJMFF044L01- GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMCP008G10+ GGCAAGTTCAGAGACGAGAGCATGCAagTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMCP008B09+ GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMCP006A11+ GGgttGTTCAGAGACGAGTGCATGCAagTTCATCAGgttTACCACATCATCCCGAGTTGC
JMSF015M15+ GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
JMCP017C02+ GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMSF015M15- GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMCP018D10+ C
JMFF044L01+ GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
rJMFF004H22- GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
____________________________________________________________
consensus GGCAAGTTCAGAGACGAGAGCATGCATCTTCATCAGCAATACCACATCATCCCGAGTTGC
. : . : . : . : . : . :
rJMFF044L01- TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
rJMCP008G10+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
rJMCP008B09+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
rJMCP006A11+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAcCTGATagTGGTTAG
JMSF015M15+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
JMCP017C02+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTGG
rJMSF015M15- TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
rJMCP018D10+ aacGGGcgaaaaCaaaacctaGTCaaGATCCATAATGATCCACAAGCTGATTCTGGTTAG
JMFF044L01+ TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
rJMFF004H22- TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
____________________________________________________________
consensus TTGGGGGCTTTTCTTTTGGATGTTTTGATCCATAATGATCCACAAGCTGATTCTGGTTAG
. : . : . : . : . : . :
rJMFF044L01- CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
rJMCP008G10+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAcCTCGGGCTTCctaga
rJMCP008B09+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGAagT
rJMCP006A11+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAAgtcCTCGGGCTTCGtagT
JMSF015M15+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
JMCP017C02+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
rJMSF015M15- CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
rJMCP018D10+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
JMFF044L01+ CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
rJMFF004H22- CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
____________________________________________________________
consensus CTAGTTGTGCCTTGCAGATGGGGCAGATGACTTTGAGGCCAACAGCTCGGGCTTCGATCT
. : . : . : . : . : . :
rJMFF044L01- G
rJMCP008G10+ GAGACCCTTTGCCCTagaGATagTTCTCCGCGTTTTTTCagTGCGCTTCGACCTTTTGCT
rJMCP008B09+ GAGACCCTTTGCCCTTCTGATagTTCTCCGCGTTTTTTCagTGCGCTTCGATCTTTTGCT
rJMCP006A11+ GAGACCCTTTGCCCTagaGATagTTgaCCGCGTTTTTagagacCGCTTCGATCTTTTGCT
JMSF015M15+ GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
JMCP017C02+ GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCagaGCcgTTCGATCTTTTGCT
rJMSF015M15- GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
rJMCP018D10+ GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
JMFF044L01+ GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
rJMFF004H22- GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
____________________________________________________________
consensus GAGACCCTTTGCCCTTCTGATTCTTCTCCGCGTTTTTTCTCTGCGCTTCGATCTTTTGCT
. : . : . : . : . : . :
rJMCP008G10+ TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAcCTTCGCTCCTACCGTCAAAaCTTCA
rJMCP008B09+ TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAcCTTCGCTCCTACCGTCAAATCTTCA
rJMCP006A11+ TTCCCCTTGTCATCTCTCTCACGTTCTCGCCAgtcCTTCGCTCCTACCGTgttAagaTCA
JMSF015M15+ TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
JMCP017C02+ TTCCCCaaGTCATCaCTCTCACGaagTCGCCACAGCTTCGCTCCTtCCGTCAAAagaTCA
rJMSF015M15- TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
rJMCP018D10+ TTCCCCTTGTCACCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
JMFF044L01+ TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
rJMFF004H22- TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
____________________________________________________________
consensus TTCCCCTTGTCATCTCTCTCACGTTCTCGCCACAGCTTCGCTCCTACCGTCAAATCTTCA
. : . : . : . : . : . :
rJMCP008G10+ GGCTCGCAGCGCAGCGGTGgttGTCAA
rJMCP008B09+ GGCTCGCAGCGCAGCGGTGgttGTCAA
rJMCP006A11+ GGCTCGgtcCGCAcCGGTGgttcTCAA
JMSF015M15+ GGCTCGC
JMCP017C02+ GGCTCGCAGCGCAG
rJMSF015M15- GGCTCGC
rJMCP018D10+ GGCTCGCAGCGCAGCGGTGCAAGTCAA
JMFF044L01+ GGCTCGCAGCGCAGCGGTGCAAGTCAAACTCTGCGTAATACCGAATGTGCGATTACCAGG
rJMFF004H22- GGCTCGCAGCGCAGCGGNGCAAGTCAAACTCTGCGTAATACCGAATGTGCGATTACCANG
____________________________________________________________
consensus GGCTCGCAGCGCAGCGGTGCAAGTCAAACTCTGCGTAATACCGAATGTGCGATTACCAGG
. : . : . : . : . : . :
JMFF044L01+ AAAATGTGGTATGGTGAACCACCCGCCTCCGTTTAGTTTCACTTCGGGACAAATT
rJMFF004H22- AAAATGTGGTATGGTGAACCACCCNCCTCCGTTTAGTTTCACTTCGGGACAAATTAATAC
____________________________________________________________
consensus AAAATGTGGTATGGTGAACCACCCGCCTCCGTTTAGTTTCACTTCGGGACAAATTAATAC