Contig 012222:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001E09Sequence679012222 (5)ref|XP_010920046.1|1e-100PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
JMFF004D19Sequence473012222 (5)ref|XP_010920046.1|5e-90PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 729012222 (5)ref|XP_010920046.1|3e-100PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
JMFN002F12Sequence581012222 (5)ref|XP_010920046.1|3e-101PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
JMSF021J04Sequence677001752 (6)ref|XP_009796960.1|2e-75PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]653012222 (5)ref|XP_010920046.1|1e-100PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

Alignment

This contig is upended


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rJMFF004D19+                                                             CGTCGAGAA
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consensus                                                                CGTCGAGAA
 
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JMFN002F12-                                TCGGGAGAGGAAGCAGAAGGAGAGAAATGGCTTCGGTGG
rJMFF001E09+                       GATTTGTGTCGGGAGAGGAAGCAGAAGGAGAGAAATGGCTTCGGTGG
rJMSF021J04+                                                  GAGAGAAATGGCTTCGGTGG
JMFF004D19-              ATTGACAGCCGATTTGTGTCGGGAGAGGAAGCAGAAGGAGAGAAATGGCTTCGGTGG
rJMFF004D19+          CCGATTGACAGCCGATTTGTGTCGGGAGAGGAAGCAGAAGGAGAGAAATGGCTTCGGTGG
                      ____________________________________________________________
consensus             CCGATTGACAGCCGATTTGTGTCGGGAGAGGAAGCAGAAGGAGAGAAATGGCTTCGGTGG
 
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JMFN002F12-           TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
rJMFF001E09+          TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
rJMSF021J04+          TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
JMFF004D19-           TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
rJMFF004D19+          TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
                      ____________________________________________________________
consensus             TGAAGAATGTGTTTAAGTCAATCAGGCAAAATGGCATCGGAAGCTTTATCAGGGAGCTCA
 
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JMFN002F12-           GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
rJMFF001E09+          GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
rJMSF021J04+          GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
JMFF004D19-           GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
rJMFF004D19+          GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
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consensus             GAGAAGAAGGCTACACGAAGTGCCTCTTGGATGGAAATCTTCTGCAAACCAAGATTCACA
 
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JMFN002F12-           ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
rJMFF001E09+          ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
rJMSF021J04+          ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
JMFF004D19-           ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
rJMFF004D19+          ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
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consensus             ACATAGGGGCAACACTTGTTGGTGTCGATAAGTTTGGTAACAAATACTATCAGAAGCTTG
 
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JMFN002F12-           GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
rJMFF001E09+          GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
rJMSF021J04+          GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
JMFF004D19-           GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
rJMFF004D19+          GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
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consensus             GAGACACTCAATATGGAAGGCATAGGTGGGTGGAGTATGCACAAAAGGGTCGTTACAATG
 
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JMFN002F12-           CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
rJMFF001E09+          CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
rJMSF021J04+          CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
JMFF004D19-           CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
rJMFF004D19+          CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
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consensus             CTTCACAAGTTCCACCAGAATGGCATGGTTGGCTCCATTTCGTCACTGACCACACAGGAG
 
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JMFN002F12-           ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
rJMFF001E09+          ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
rJMSF021J04+          ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
JMFF004D19-           ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
rJMFF004D19+          ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
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consensus             ATGAGCTACTATTGCTGAAACCAAAGAGATACGGGGTTGAACACAAAGAGAACTTTTCTG
 
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JMFN002F12-           GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAGAGAG
rJMFF001E09+          GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAGAGAG
rJMSF021J04+          GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAGAGAG
JMFF004D19-           GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAG    
rJMFF004D19+          GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAGAGAG
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consensus             GAGAGGGCGAAGAGCTCATCTATCATTCCAAAGGGCACTCCCTTAATCCTGGGCAGAGAG
 
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JMFN002F12-           ACTGGACAAGGTACCAACCCTGGCAGCCAACTAAGCCCTAAGTTTCCTTTTCTTCACCTC
rJMFF001E09+          ACTGGACAAGGTACCAACCCTGGCAGCCAACTAAGCCCTAAGTTTCCTTTTCTTCACCTC
rJMSF021J04+          ACTGGACAAGGTACCAACCCTGGCAGCCAACTAAGCCCTAAGTTTCCTTTTCTTCACCTC
rJMFF004D19+          ACTGGACAAGGTACCAACCCTGGCAGCCAACTAAGCCCTAAGTTTCCTTTTCTTCACCTC
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consensus             ACTGGACAAGGTACCAACCCTGGCAGCCAACTAAGCCCTAAGTTTCCTTTTCTTCACCTC
 
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JMFN002F12-           AAGAGAAGCTGGAAAAGCATACAGAATGCCAGCTATGTTTCATTAATAAGCTNTTATTAA
rJMFF001E09+          AAGAGAAGCTGGAAAAGCATACAGAATGCCAGCTATGTTTCATTAATAAGCTTTTATTAA
rJMSF021J04+          AAGAGAAGCTGGAAAAGCATACAGAATGCCAGCTATGTTTCATTAATAAGCTTTTATTAA
rJMFF004D19+          AAGAGAAGCTGGAAAAGCATACAGAATGCCAGCTATGTTTCATTAATAAGCTTTTATTAA
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consensus             AAGAGAAGCTGGAAAAGCATACAGAATGCCAGCTATGTTTCATTAATAAGCTTTTATTAA
 
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JMFN002F12-           CT                                                          
rJMFF001E09+          CTGTTAAATTGGTTACTAGTATCATTTTGTTTTGTCTGCTAGTCAAAATATTCTTGGACT
rJMSF021J04+          CTGTTAAATTGGTTACTAGTATCATTTTGTTTTATCTGCTAGTCAAAATATTCTTGGACT
rJMFF004D19+          CTGTTAAATTGGTTACTAGTATCATTTTGTTTTGTCTGCTAGTCAAAATATTCTTGGACT
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consensus             CTGTTAAATTGGTTACTAGTATCATTTTGTTTTGTCTGCTAGTCAAAATATTCTTGGACT
 
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rJMFF001E09+          TCGAATTGAATATGTTACACTTTTTAAGTGCT                            
rJMSF021J04+          TCGAATTGAATATGTTACACTTTTTAAGTGCT                            
rJMFF004D19+          TCGAATTGAATATGTTACACTTTTTAAGTGCTTGGATATGTTTGATGCTAATAAAGAAAG
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consensus             TCGAATTGAATATGTTACACTTTTTAAGTGCTTGGATATGTTTGATGCTAATAAAGAAAG