Contig 012217:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003F18Sequence427000479 (7)ref|XP_009764289.1|3e-06PREDICTED: ethylene-overproduction protein 1-like isoform X2 [Nicotiana sylvest722012217 (4)ref|XP_009764288.1|5e-54PREDICTED: ethylene-overproduction protein 1-like isoform X1 [Nicotiana sylvest
JMFN006F09Sequence659012217 (4)ref|XP_009764288.1|6e-100PREDICTED: ethylene-overproduction protein 1-like isoform X1 [Nicotiana sylvest
JMSF037M03Sequence648000479 (7)ref|XP_009764289.1|6e-32PREDICTED: ethylene-overproduction protein 1-like isoform X2 [Nicotiana sylvest702012217 (4)ref|XP_009764288.1|1e-55PREDICTED: ethylene-overproduction protein 1-like isoform X1 [Nicotiana sylvest
JMSF039B06Sequence620000479 (7)ref|XP_009764289.1|3e-27PREDICTED: ethylene-overproduction protein 1-like isoform X2 [Nicotiana sylvest783012217 (4)ref|XP_009764288.1|8e-59PREDICTED: ethylene-overproduction protein 1-like isoform X1 [Nicotiana sylvest

Alignment

This contig is upended


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JMFN006F09-                                                        GGGAGTATATATGTG
                      ____________________________________________________________
consensus                                                          GGGAGTATATATGTG
 
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JMFN006F09-           GATTGCGGGAAGCTGGATCTTGCAGCGGACTGTTACGTCAGTGCCCTCGAAATCAAGCAT
                      ____________________________________________________________
consensus             GATTGCGGGAAGCTGGATCTTGCAGCGGACTGTTACGTCAGTGCCCTCGAAATCAAGCAT
 
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JMFN006F09-           ACGAGAGCTCATCAAGGTTTAGCACGCGTTTATTATCTCAAGAACGATAGGAAAGCTGCT
rJMSF039B06+                                              CTCAAGAACGATAGGAAAGCTGCT
                      ____________________________________________________________
consensus             ACGAGAGCTCATCAAGGTTTAGCACGCGTTTATTATCTCAAGAACGATAGGAAAGCTGCT
 
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JMFN006F09-           TATGATGAAATGACAAAGCTTATAGAGAAGGCGCAAAA-CAAGGCTTCGGCTTATGAGAA
rJMSF039B06+          TATGATGAAATGACAAAGCTTATAGAGAAGGCGCAAAANCAAGGCTTCGGCTTATGAGAA
                      ____________________________________________________________
consensus             TATGATGAAATGACAAAGCTTATAGAGAAGGCGCAAAANCAAGGCTTCGGCTTATGAGAA
 
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JMFN006F09-           ACGATCAGAATATTGCGATCGGGAAATGGCAAATAGTGATCTCAGCATGGCAACACAATT
rJMSF037M03+           CGATCAGAATATTGCGATCGGGAAATGGCAAATAGTGATCTCAGCATGGCAACACAATT
rJMSF039B06+          ACGATCAGAATATTGCGATCGGGAAATGGCAAATAGTGATCTCAGCATGGCAACACAATT
rJMFF003F18+           CGATCAGAATATTGCGATCGGGAAATGGCAAATAGTGATCTCAGCATGGCAACACAATT
                      ____________________________________________________________
consensus             ACGATCAGAATATTGCGATCGGGAAATGGCAAATAGTGATCTCAGCATGGCAACACAATT
 
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JMFN006F09-           GGATCCTTTGAGGACTTACCCGTACAGATACAGAGCCGCAGTGCTTATGGATGACCAAAG
rJMSF037M03+          GGATCCTTTGAGGACTTACCCGTACAGATACAGAGCCGCAGTGCTTATGGATGACCAAAG
rJMSF039B06+          GGATCCTTTGAGGACTTACCCGTACAGATACAGAGCCGCAGTGCTTATGGATGACCAAAG
rJMFF003F18+          GGATCCTTTGAGGACTTACCCGTACAGATACAGAGCCGCAGTGCTTATGGATGACCAAAG
                      ____________________________________________________________
consensus             GGATCCTTTGAGGACTTACCCGTACAGATACAGAGCCGCAGTGCTTATGGATGACCAAAG
 
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JMFN006F09-           AGAAACCGAAGCGGTAGAGGAGCTTACAAGAGCGGTATCCTTCAAACCCGACCTGCAAAT
rJMSF037M03+          AGAAACCGAAGCGGTAGAGGAGCTTACAAGAGCGGTATCCTTCAAACCCGACCTGCAAAT
rJMSF039B06+          AGAAACCGAAGCGGTAGAGGAGCTTACAAGAGCGGTATCCTTCAAACCCGACCTGCAAAT
rJMFF003F18+          AGAAACCGAAGCGGTAGAGGAGCTTACAAGAGCGGTATCCTTCAAACCCGACCTGCAAAT
                      ____________________________________________________________
consensus             AGAAACCGAAGCGGTAGAGGAGCTTACAAGAGCGGTATCCTTCAAACCCGACCTGCAAAT
 
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JMFN006F09-           GCTCAATCTCCGAGCTGCATTCCACGAGTCCATGAGCGATTTCACCTCGGCTCTCCAAGA
rJMSF037M03+          GCTCAATCTCCGAGCTGCATTCCACGAGTCCATGAGCGATTTCACCTCGGCTCTCCAAGA
rJMSF039B06+          GCTCAATCTCCGAGCTGCATTCCACGAGTCCATGAGCGATTTCACCTCGGCTCTCCAAGA
rJMFF003F18+          GCTCAATCTCCGAGCTGCATTCCACGAGTCCATGAGCGATTTCACCTCGGCTCTCCAAGA
                      ____________________________________________________________
consensus             GCTCAATCTCCGAGCTGCATTCCACGAGTCCATGAGCGATTTCACCTCGGCTCTCCAAGA
 
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JMFN006F09-           TTGCGAAGCAGCACTCTGCTTGGATCCCAGCCATAAAGACACCCTAGATCTCTACCACCG
rJMSF037M03+          TTGCGAAGCAGCACTCTGCTTGGATCCCAGCCATAAAGACACCCTAGATCTCTACCACCG
rJMSF039B06+          TTGCGAAGCAGCACTCTGCTTGGATCCCAGCCATAAAGACACCCTAGATCTCTACCACCG
rJMFF003F18+          TTGCGAAGCAGCACTCTGCTTGGATCCCAGCCATAAAGACACCCTAGATCTCTACCACCG
                      ____________________________________________________________
consensus             TTGCGAAGCAGCACTCTGCTTGGATCCCAGCCATAAAGACACCCTAGATCTCTACCACCG
 
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JMFN006F09-           CACACGAAACAAAGCCACCACCCAGCATAAAGTTTGCGCTTCTTTCTACAATGCAGCCGG
rJMSF037M03+          CACACGAAACAAAGCCACCACCCAGCATAAAGTTTGCGCTTCTTTCTACAATGTAGCCGG
rJMSF039B06+          CACACGAAACAAAGCCACCACCCAGCATAAAGTTTGCGCTTCTTTCTACAATGCAGCCGG
rJMFF003F18+          CACACGAAACAAAGCCACCACCCAGCATAAAGTTTGCGCTTCTTTCTACAATGCAGCCGG
                      ____________________________________________________________
consensus             CACACGAAACAAAGCCACCACCCAGCATAAAGTTTGCGCTTCTTTCTACAATGCAGCCGG
 
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JMFN006F09-           TCTGGGATGATCGCTTCGGTTCAGGGGCGANAAAGGATCCACTCGGGATTTACCCTCGAC
rJMSF037M03+          TCTGGGATGATCGCTTCGGTTCAGGGGCGAAAAAGGATCCACTCGGGATTTACCCTCGAC
rJMSF039B06+          TCTGGGATGATCGCTTCGGTTCAGGGGCGAAAAAGGATCCACTCGGGATTTACCCTCGAC
rJMFF003F18+          TCTGGGATGATCGCTTCGGTTCAGGGGCGAAAAAGGATCCACTCGGGATTTACCCTCGAC
                      ____________________________________________________________
consensus             TCTGGGATGATCGCTTCGGTTCAGGGGCGAAAAAGGATCCACTCGGGATTTACCCTCGAC
 
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JMFN006F09-           TTGACTCTTCGGAAATTGGCTTGTCGTTTGATCATTCAGTTGCAA               
rJMSF037M03+          TTGACTCTTCGGAAATTGGCTTGTCGTTTGATCATTCAGTTGCAAGGTTGGTGATAACTT
rJMSF039B06+          TTGACTCTTCGGAAATTGGCTTGTCGTTTGATCATTCAGTTGCAAGGTTGGTGATAACTT
rJMFF003F18+          TTGACTCTTCGGAAATTGGCTTGTCGTTTGATCATTCAGTTGCAAGGTTGGTGATAACTT
                      ____________________________________________________________
consensus             TTGACTCTTCGGAAATTGGCTTGTCGTTTGATCATTCAGTTGCAAGGTTGGTGATAACTT
 
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rJMSF037M03+          ATATTACAATGAAGGTGTATCTGTTCGGGTGCGAAGAAAATGGAGTGTGTACATATCTGT
rJMSF039B06+          ATATTACAATGAAGGTGTATCTGTTCGGGTGCGAAGAAAATGGAGTGTGTACATATCTGT
rJMFF003F18+          ATATTACAATGAAGGTGTATCTGTTCGGGTGCGAAGAAAATGGAGTGTGTACATATCTGT
                      ____________________________________________________________
consensus             ATATTACAATGAAGGTGTATCTGTTCGGGTGCGAAGAAAATGGAGTGTGTACATATCTGT
 
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rJMSF037M03+          TGCAGCATTACATGATTGCTTAGGATCATCCTGACAATGGGGGTAATGTAGTTGATCCAA
rJMSF039B06+          TGCAGCATTACATGATTGCTTAGGATCATCCTGACAATGGGGGTAATGTAGTTGATCCAA
rJMFF003F18+          TGCAGCATTACATGATTGCTTAGGATCATCCTGACAATGGGGGTAATGTAGTTGATCCAA
                      ____________________________________________________________
consensus             TGCAGCATTACATGATTGCTTAGGATCATCCTGACAATGGGGGTAATGTAGTTGATCCAA
 
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rJMSF037M03+          AAAAGCATTTCACGGCAAACAAACATCACACATGAAAAATGTTGTCACGGTAAACAATCA
rJMSF039B06+          AAAAGCATTTCACGGCAAACAAACATCACACATGAAAAATGTTGTCACGGTAAACAATCA
rJMFF003F18+          AAAAGCATTTCACGGCAAACAAACATCACACATGAAAAATGTTGTCACGGTAAACAATCA
                      ____________________________________________________________
consensus             AAAAGCATTTCACGGCAAACAAACATCACACATGAAAAATGTTGTCACGGTAAACAATCA
 
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rJMSF037M03+          ATTTTGTGGATTGTCTCATTGTAAACATCATTGATC                        
rJMSF039B06+          ATTTTGTGGATTGTCTCATTGTAAACATCATTGATC                        
rJMFF003F18+          ATTTTGTGGATTGTCTCATTGTAAACATCATTGATCCTTTCAAACAGATAATCAAGAAGT
                      ____________________________________________________________
consensus             ATTTTGTGGATTGTCTCATTGTAAACATCATTGATCCTTTCAAACAGATAATCAAGAAGT