Contig 012211:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D03Sequence574004524 (3)ref|XP_002298520.1|3e-54leucine-rich repeat transmembrane protein kinase [Populus trichocarpa] gb|EEE833745012211 (3)ref|XP_006357131.1|4e-90PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMFF016K13Sequence645004524 (3)ref|XP_010091928.1|8e-57putative inactive receptor kinase [Morus notabilis] gb|EXB47708.1| putative inac777012211 (3)ref|XP_006357131.1|3e-95PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]
JMSF007D24Sequence411004524 (3)emb|CDP02178.1|1e-24unnamed protein product [Coffea canephora]756012211 (3)ref|XP_006357131.1|8e-96PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF016K13+ GTCAACCGCCAATCCCT
                      ____________________________________________________________
consensus GTCAACCGCCAATCCCT
 
. : . : . : . : . : . :
rJMSF007D24+ CCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF016K13+ CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF002D03+ GATGAGGATTTCGATGCCAGGATAA
                      ____________________________________________________________
consensus CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
 
. : . : . : . : . : . :
rJMSF007D24+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF016K13+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF002D03+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
                      ____________________________________________________________
consensus TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
 
. : . : . : . : . : . :
rJMSF007D24+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF016K13+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF002D03+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
                      ____________________________________________________________
consensus AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
 
. : . : . : . : . : . :
rJMSF007D24+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF016K13+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF002D03+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
                      ____________________________________________________________
consensus CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
 
. : . : . : . : . : . :
rJMSF007D24+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF016K13+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF002D03+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
                      ____________________________________________________________
consensus AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
 
. : . : . : . : . : . :
rJMSF007D24+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF016K13+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF002D03+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
                      ____________________________________________________________
consensus ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
 
. : . : . : . : . : . :
rJMSF007D24+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF016K13+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF002D03+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
                      ____________________________________________________________
consensus GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
 
. : . : . : . : . : . :
rJMSF007D24+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF016K13+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF002D03+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
                      ____________________________________________________________
consensus CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
 
. : . : . : . : . : . :
rJMSF007D24+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF016K13+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF002D03+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
                      ____________________________________________________________
consensus AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
 
. : . : . : . : . : . :
rJMSF007D24+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF016K13+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF002D03+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
                      ____________________________________________________________
consensus GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
 
. : . : . : . : . : . :
rJMSF007D24+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF016K13+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF002D03+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
                      ____________________________________________________________
consensus CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
 
. : . : . : . : . : . :
rJMSF007D24+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF016K13+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF002D03+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
                      ____________________________________________________________
consensus CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
 
. : . : . : . : . : . :
rJMSF007D24+ CCTTCCTTTTGTCAAGTACTTGTTGGATTAAAAGC
rJMFF016K13+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGC
rJMFF002D03+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT
                      ____________________________________________________________
consensus CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT