| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002D03 | Sequence | 574 | 004524 (3) | ref|XP_002298520.1| | 3e-54 | leucine-rich repeat transmembrane protein kinase [Populus trichocarpa] gb|EEE833 | 745 | 012211 (3) | ref|XP_006357131.1| | 4e-90 | PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum] |
| JMFF016K13 | Sequence | 645 | 004524 (3) | ref|XP_010091928.1| | 8e-57 | putative inactive receptor kinase [Morus notabilis] gb|EXB47708.1| putative inac | 777 | 012211 (3) | ref|XP_006357131.1| | 3e-95 | PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum] |
| JMSF007D24 | Sequence | 411 | 004524 (3) | emb|CDP02178.1| | 1e-24 | unnamed protein product [Coffea canephora] | 756 | 012211 (3) | ref|XP_006357131.1| | 8e-96 | PREDICTED: probable inactive receptor kinase At1g27190-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF016K13+ GTCAACCGCCAATCCCT
____________________________________________________________
consensus GTCAACCGCCAATCCCT
. : . : . : . : . : . :
rJMSF007D24+ CCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF016K13+ CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
rJMFF002D03+ GATGAGGATTTCGATGCCAGGATAA
____________________________________________________________
consensus CCCACCAGAATTTCAGTTCTCACGCTATTCTTCTGGATGAGGATTTCGATGCCAGGATAA
. : . : . : . : . : . :
rJMSF007D24+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF016K13+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
rJMFF002D03+ TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
____________________________________________________________
consensus TGGATTTCGGGTTGGCGAGGCTTATGGCACCTCCAGATGCACACGAGACTAGTTTTGTGA
. : . : . : . : . : . :
rJMSF007D24+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF016K13+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
rJMFF002D03+ AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
____________________________________________________________
consensus AGGGGGATTTAGGTGAATTCGGGTATGTAGCTCCCGAGTACTCGAGCACAATGATTCCCT
. : . : . : . : . : . :
rJMSF007D24+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF016K13+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
rJMFF002D03+ CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
____________________________________________________________
consensus CAACGAAAGGCGATGCTTACAGCTTCGGAGTTGTCCTTCTGGAGTTGGCTACCGGGCAAA
. : . : . : . : . : . :
rJMSF007D24+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF016K13+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
rJMFF002D03+ AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
____________________________________________________________
consensus AACCACTCGAACTCACCACTGCTGAAGAAGGCTTTAAAGGCAACCTGGTGGACTGGGTAA
. : . : . : . : . : . :
rJMSF007D24+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF016K13+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
rJMFF002D03+ ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
____________________________________________________________
consensus ATCAGCACTCTGGATCGGGTCGTATTAAAGATGTCATTGATAAGAGCATATGTGGGAGGG
. : . : . : . : . : . :
rJMSF007D24+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF016K13+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
rJMFF002D03+ GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
____________________________________________________________
consensus GCCACGATGAACAGATCGTGCAGTTCCTAAGAATCGCATGCAATTGTGTTGTCTCTCGCT
. : . : . : . : . : . :
rJMSF007D24+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF016K13+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
rJMFF002D03+ CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
____________________________________________________________
consensus CCAAGGAAAGGTGGTCGATGTATCAGGCATACGAAGCATTGAACAAAATGGCTGCACAGC
. : . : . : . : . : . :
rJMSF007D24+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF016K13+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
rJMFF002D03+ AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
____________________________________________________________
consensus AAGGTATCTCTGAACCATACGACGAATTCCCTCTAATTTTCACCGAACAAGATACTAGCA
. : . : . : . : . : . :
rJMSF007D24+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF016K13+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
rJMFF002D03+ GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
____________________________________________________________
consensus GTCCTATGTAATATATGCAGAAGGCATGAAAAACCATTGTGCCTCGCCAAATGTTTCTCT
. : . : . : . : . : . :
rJMSF007D24+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF016K13+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
rJMFF002D03+ CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
____________________________________________________________
consensus CATCTGGTACGCTCTCTCGTATGCCTCTAGTGTAAGTGTTGTAATGTAATGTCCTTTTTA
. : . : . : . : . : . :
rJMSF007D24+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF016K13+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
rJMFF002D03+ CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
____________________________________________________________
consensus CTATCGGGTTTTGAAAATATGTCTGTTACTATGGCTGTATACCATGATTTAGTTCATAAA
. : . : . : . : . : . :
rJMSF007D24+ CCTTCCTTTTGTCAAGTACTTGTTGGATTAAAAGC
rJMFF016K13+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGC
rJMFF002D03+ CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT
____________________________________________________________
consensus CCTTCCTTTTGTCAAGTACTTGTTGGATCAAAAGCAACTGCTGATTATGTTCTATGACAT