Contig 012209:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007G06Sequence118012209 (10)
JMCP019A12Sequence284012209 (10)
JMFF001L06Sequence473006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph273012209 (10)
JMFF011J12Sequence466006608 (10)ref|XP_011031070.1|7e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph430012209 (10)
JMFF026D06Sequence456006608 (10)ref|XP_011031070.1|6e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph481012209 (10)ref|XP_009588928.1|2e-13PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMFF026E02Sequence551006608 (10)gb|KJB18237.1|3e-13hypothetical protein B456_003G041500 [Gossypium raimondii]528012209 (10)ref|XP_009588928.1|1e-09PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMSF015I21Sequence232006608 (10)262012209 (10)
JMSF022B08Sequence580006608 (10)gb|KJB18238.1|2e-21hypothetical protein B456_003G041500 [Gossypium raimondii]297012209 (10)
JMSF035A02Sequence586006608 (10)gb|KJB18237.1|3e-22hypothetical protein B456_003G041500 [Gossypium raimondii]726012209 (10)ref|XP_009588928.1|3e-48PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform
JMSF043A04Sequence466006608 (10)ref|XP_011031070.1|2e-10PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph557012209 (10)ref|XP_009588928.1|4e-12PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035A02+ CAGGAGCTTGGG
                      ____________________________________________________________
consensus CAGGAGCTTGGG
 
. : . : . : . : . : . :
rJMSF035A02+ NTGCAGCCTAGACAGGNGGCGGTGTGGTTCCAGAACCGCCGCGCACNGTGGAAGACCAAA
                      ____________________________________________________________
consensus NTGCAGCCTAGACAGGNGGCGGTGTGGTTCCAGAACCGCCGCGCACNGTGGAAGACCAAA
 
. : . : . : . : . : . :
rJMSF035A02+ CAGCTGGAGAGAGANTACGGCGTGCTCAAAGCCAACTATGATAGCCTCAAGCACAACTAT
                      ____________________________________________________________
consensus CAGCTGGAGAGAGANTACGGCGTGCTCAAAGCCAACTATGATAGCCTCAAGCACAACTAT
 
. : . : . : . : . : . :
rJMSF035A02+ GAATCTNTGCAGCTTGACAAGGAATCACTCCTCAAACAAATTCGCGACCTGAAAACAAAA
                      ____________________________________________________________
consensus GAATCTNTGCAGCTTGACAAGGAATCACTCCTCAAACAAATTCGCGACCTGAAAACAAAA
 
. : . : . : . : . : . :
rJMSF035A02+ CTAAACGGAGAAATGAAGGAGGAGGACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
rJMSF043A04+ GACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
                      ____________________________________________________________
consensus CTAAACGGAGAAATGAAGGAGGAGGACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
 
. : . : . : . : . : . :
rJMSF035A02+ CTGAATTTTGAGGCGGCGGCCGCCGCCGCC-GCCGCCGCCGTTCCGGCGGATTTCAAAGA
rJMFF026D06+ CGGCGGATTTCAAAGA
rJMSF043A04+ CTGAATTTTGAGGCGGCGGCCGCCGCCGCCGGCCGCCGCCGTTCCGGCGGATTTCAAAGA
rJMFF026E02+ CGGCGGATTTCAAAGA
                      ____________________________________________________________
consensus CTGAATTTTGAGGCGGCGGCCGCCGCCGCCGGCCGCCGCCGTTCCGGCGGATTTCAAAGA
 
. : . : . : . : . : . :
rJMSF035A02+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMFF026D06+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMSF043A04+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMFF026E02+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
                      ____________________________________________________________
consensus CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
 
. : . : . : . : . : . :
rJMSF035A02+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMFF026D06+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMSF043A04+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMFF026E02+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
                      ____________________________________________________________
consensus CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
 
. : . : . : . : . : . :
rJMSF035A02+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMFF026D06+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMSF043A04+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMFF026E02+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
                      ____________________________________________________________
consensus TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
 
. : . : . : . : . : . :
rJMSF035A02+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMFF026D06+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMSF043A04+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMFF026E02+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
                      ____________________________________________________________
consensus GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
 
. : . : . : . : . : . :
rJMSF035A02+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF026D06+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMSF043A04+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF026E02+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF011J12+ TCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
                      ____________________________________________________________
consensus GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
 
. : . : . : . : . : . :
rJMSF035A02+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF026D06+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMSF043A04+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF026E02+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF011J12+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACNTTGAAACGCCGTTTAGTTTNT
                      ____________________________________________________________
consensus CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
 
. : . : . : . : . : . :
rJMSF035A02+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGAC
rJMFF026D06+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMSF043A04+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMFF026E02+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTCGTATAGTAATGTTAAGACTTAAG
JMCP019A12- TGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMCP007G06- TGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMFF011J12+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
                      ____________________________________________________________
consensus TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
 
. : . : . : . : . : . :
rJMFF026D06+ ATTAGTCTCTGTAT
rJMSF043A04+ ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCT
rJMFF026E02+ ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGTCATAAGATTCAAGAAA
JMCP019A12- ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
rJMCP007G06- ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
rJMFF011J12+ ATTAGTNTNTGTATTGTAGAAAACGAAGATGTTTCGCATNTTGGCATAAGATTCAAGAAA
rJMSF022B08+ TTGTAGAAAACGAAGATGTTTNNCNTNTTGGCNTNAGNTTCCAGAAA
rJMFF001L06+ AGAAA
                      ____________________________________________________________
consensus ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
 
. : . : . : . : . : . :
rJMFF026E02+ T
JMCP019A12- TCTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCcGtGTTGAATGACGTAAGGG
rJMCP007G06- TCTGAAGAGGTGAAAAATAAAATTT
rJMFF011J12+ TTTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMSF015I21+ AAAATNAAATTTNAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMSF022B08+ TTTGAAGNGGNGNAAAATNAAATTTTAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMFF001L06+ TTTGAAGNGGGGNAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGGATGACGTAAGGG
                      ____________________________________________________________
consensus TTTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
 
. : . : . : . : . : . :
JMCP019A12- GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCcctctgtGGAAGCGTGTGGGTAAG
rJMFF011J12+ GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
rJMSF015I21+ GTTGTGACGCGGTGGCGCGGCCNCCCGGAGCCCGGCGGAGACCGGAAGCGTGTGGGTAAG
rJMSF022B08+ GTTGTGACGCGGTGGCGCGGCCNCNCGGAGCNCGGCGGAGACCGGAAGCGTGTGGGTAAG
rJMFF001L06+ GTTGTGACGCGGTGGCGCGGCCGCNCGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
                      ____________________________________________________________
consensus GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
 
. : . : . : . : . : . :
JMCP019A12- GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGtctTGTCTCGCAC
rJMFF011J12+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
rJMSF015I21+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
rJMSF022B08+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCNC
rJMFF001L06+ GGTAAAAANGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
                      ____________________________________________________________
consensus GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
 
. : . : . : . : . : . :
JMCP019A12- GTTTGCCTT
rJMFF011J12+ GTTTGCCTTTCACTTTCACTTTTTACTGTCAAAAC
rJMSF015I21+ GTTTGCCNTTCACTTTCACTTTTTACNGTCAAAACNTAATAAAAAA
rJMSF022B08+ GTTTGCCTTTCNCTTTCNCTTTTTACTGTCAAAACATAATAAAAAA
rJMFF001L06+ GTTTGCCTTTCACTTTCACTTTTTACCGTCAAAACATAATNAAAAAACTTCACAAAAANA
                      ____________________________________________________________
consensus GTTTGCCTTTCACTTTCACTTTTTACTGTCAAAACATAATAAAAAAACTTCACAAAAANA