| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP007G06 | Sequence | 118 | 012209 (10) | ||||||||
| JMCP019A12 | Sequence | 284 | 012209 (10) | ||||||||
| JMFF001L06 | Sequence | 473 | 006608 (10) | ref|XP_011031070.1| | 7e-12 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph | 273 | 012209 (10) | |||
| JMFF011J12 | Sequence | 466 | 006608 (10) | ref|XP_011031070.1| | 7e-12 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph | 430 | 012209 (10) | |||
| JMFF026D06 | Sequence | 456 | 006608 (10) | ref|XP_011031070.1| | 6e-12 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph | 481 | 012209 (10) | ref|XP_009588928.1| | 2e-13 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform |
| JMFF026E02 | Sequence | 551 | 006608 (10) | gb|KJB18237.1| | 3e-13 | hypothetical protein B456_003G041500 [Gossypium raimondii] | 528 | 012209 (10) | ref|XP_009588928.1| | 1e-09 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform |
| JMSF015I21 | Sequence | 232 | 006608 (10) | 262 | 012209 (10) | ||||||
| JMSF022B08 | Sequence | 580 | 006608 (10) | gb|KJB18238.1| | 2e-21 | hypothetical protein B456_003G041500 [Gossypium raimondii] | 297 | 012209 (10) | |||
| JMSF035A02 | Sequence | 586 | 006608 (10) | gb|KJB18237.1| | 3e-22 | hypothetical protein B456_003G041500 [Gossypium raimondii] | 726 | 012209 (10) | ref|XP_009588928.1| | 3e-48 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform |
| JMSF043A04 | Sequence | 466 | 006608 (10) | ref|XP_011031070.1| | 2e-10 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Populus euph | 557 | 012209 (10) | ref|XP_009588928.1| | 4e-12 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
rJMSF035A02+ CAGGAGCTTGGG
____________________________________________________________
consensus CAGGAGCTTGGG
. : . : . : . : . : . :
rJMSF035A02+ NTGCAGCCTAGACAGGNGGCGGTGTGGTTCCAGAACCGCCGCGCACNGTGGAAGACCAAA
____________________________________________________________
consensus NTGCAGCCTAGACAGGNGGCGGTGTGGTTCCAGAACCGCCGCGCACNGTGGAAGACCAAA
. : . : . : . : . : . :
rJMSF035A02+ CAGCTGGAGAGAGANTACGGCGTGCTCAAAGCCAACTATGATAGCCTCAAGCACAACTAT
____________________________________________________________
consensus CAGCTGGAGAGAGANTACGGCGTGCTCAAAGCCAACTATGATAGCCTCAAGCACAACTAT
. : . : . : . : . : . :
rJMSF035A02+ GAATCTNTGCAGCTTGACAAGGAATCACTCCTCAAACAAATTCGCGACCTGAAAACAAAA
____________________________________________________________
consensus GAATCTNTGCAGCTTGACAAGGAATCACTCCTCAAACAAATTCGCGACCTGAAAACAAAA
. : . : . : . : . : . :
rJMSF035A02+ CTAAACGGAGAAATGAAGGAGGAGGACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
rJMSF043A04+ GACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
____________________________________________________________
consensus CTAAACGGAGAAATGAAGGAGGAGGACAAGGATGCAAAGCCAAACTCCGATGAAATAGAG
. : . : . : . : . : . :
rJMSF035A02+ CTGAATTTTGAGGCGGCGGCCGCCGCCGCC-GCCGCCGCCGTTCCGGCGGATTTCAAAGA
rJMFF026D06+ CGGCGGATTTCAAAGA
rJMSF043A04+ CTGAATTTTGAGGCGGCGGCCGCCGCCGCCGGCCGCCGCCGTTCCGGCGGATTTCAAAGA
rJMFF026E02+ CGGCGGATTTCAAAGA
____________________________________________________________
consensus CTGAATTTTGAGGCGGCGGCCGCCGCCGCCGGCCGCCGCCGTTCCGGCGGATTTCAAAGA
. : . : . : . : . : . :
rJMSF035A02+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMFF026D06+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMSF043A04+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
rJMFF026E02+ CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
____________________________________________________________
consensus CGGGTCATCGGACAGCGATTCCAGCGTGATCCTGAACGAGGAAACCAGCAGCTACCACTC
. : . : . : . : . : . :
rJMSF035A02+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMFF026D06+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMSF043A04+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
rJMFF026E02+ CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
____________________________________________________________
consensus CTCGGAGGCGTTCTTGATATCCCACGAACCCTTCCCGGACTGCTTCAAATTGTCGGAGCA
. : . : . : . : . : . :
rJMSF035A02+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMFF026D06+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMSF043A04+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
rJMFF026E02+ TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
____________________________________________________________
consensus TTTTAAGCCGGCGACGGCCGTTCTCGCCGACGCCGCCGCCGTCCATAAGCTGGCGTATCC
. : . : . : . : . : . :
rJMSF035A02+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMFF026D06+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMSF043A04+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
rJMFF026E02+ GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
____________________________________________________________
consensus GCCGCTACAGCTCGTGAAAATTGAGGAACAGTTCAGCAGCGAGGAATCATGCAGTACTCT
. : . : . : . : . : . :
rJMSF035A02+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF026D06+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMSF043A04+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF026E02+ GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
rJMFF011J12+ TCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
____________________________________________________________
consensus GTTCTCCGACGAACAAGCTCCTACTCTCCCCTGGTACTGCCCTGATCCTGATCCCGAGAG
. : . : . : . : . : . :
rJMSF035A02+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF026D06+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMSF043A04+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF026E02+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
rJMFF011J12+ CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACNTTGAAACGCCGTTTAGTTTNT
____________________________________________________________
consensus CTGGAATAACTGGAAAGAAGATGAACAATAAAAAAAACATTGAAACGCCGTTTAGTTTCT
. : . : . : . : . : . :
rJMSF035A02+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGAC
rJMFF026D06+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMSF043A04+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMFF026E02+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTCGTATAGTAATGTTAAGACTTAAG
JMCP019A12- TGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMCP007G06- TGGAATTTTTGTATAGTAATGTTAAGACTTAAG
rJMFF011J12+ TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
____________________________________________________________
consensus TGAAACTCCGACGTGGCGCCGGCCGGGTGGAATTTTTGTATAGTAATGTTAAGACTTAAG
. : . : . : . : . : . :
rJMFF026D06+ ATTAGTCTCTGTAT
rJMSF043A04+ ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCT
rJMFF026E02+ ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGTCATAAGATTCAAGAAA
JMCP019A12- ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
rJMCP007G06- ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
rJMFF011J12+ ATTAGTNTNTGTATTGTAGAAAACGAAGATGTTTCGCATNTTGGCATAAGATTCAAGAAA
rJMSF022B08+ TTGTAGAAAACGAAGATGTTTNNCNTNTTGGCNTNAGNTTCCAGAAA
rJMFF001L06+ AGAAA
____________________________________________________________
consensus ATTAGTCTCTGTATTGTAGAAAACGAAGATGTTTCGCATCTTGGCATAAGATTCAAGAAA
. : . : . : . : . : . :
rJMFF026E02+ T
JMCP019A12- TCTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCcGtGTTGAATGACGTAAGGG
rJMCP007G06- TCTGAAGAGGTGAAAAATAAAATTT
rJMFF011J12+ TTTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMSF015I21+ AAAATNAAATTTNAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMSF022B08+ TTTGAAGNGGNGNAAAATNAAATTTTAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
rJMFF001L06+ TTTGAAGNGGGGNAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGGATGACGTAAGGG
____________________________________________________________
consensus TTTGAAGAGGTGAAAAATAAAATTTAAAAAAAAAAATGGCGGAGTTGAATGACGTAAGGG
. : . : . : . : . : . :
JMCP019A12- GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCcctctgtGGAAGCGTGTGGGTAAG
rJMFF011J12+ GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
rJMSF015I21+ GTTGTGACGCGGTGGCGCGGCCNCCCGGAGCCCGGCGGAGACCGGAAGCGTGTGGGTAAG
rJMSF022B08+ GTTGTGACGCGGTGGCGCGGCCNCNCGGAGCNCGGCGGAGACCGGAAGCGTGTGGGTAAG
rJMFF001L06+ GTTGTGACGCGGTGGCGCGGCCGCNCGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
____________________________________________________________
consensus GTTGTGACGCGGTGGCGCGGCCGCACGGAGCACGGCGGAGACAGGAAGCGTGTGGGTAAG
. : . : . : . : . : . :
JMCP019A12- GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGtctTGTCTCGCAC
rJMFF011J12+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
rJMSF015I21+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
rJMSF022B08+ GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCNC
rJMFF001L06+ GGTAAAAANGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
____________________________________________________________
consensus GGTAAAAAGGGGGCGGCTTTTGGAAGGGATGATTGGATAGTAATTTGAGATGTCTCGCAC
. : . : . : . : . : . :
JMCP019A12- GTTTGCCTT
rJMFF011J12+ GTTTGCCTTTCACTTTCACTTTTTACTGTCAAAAC
rJMSF015I21+ GTTTGCCNTTCACTTTCACTTTTTACNGTCAAAACNTAATAAAAAA
rJMSF022B08+ GTTTGCCTTTCNCTTTCNCTTTTTACTGTCAAAACATAATAAAAAA
rJMFF001L06+ GTTTGCCTTTCACTTTCACTTTTTACCGTCAAAACATAATNAAAAAACTTCACAAAAANA
____________________________________________________________
consensus GTTTGCCTTTCACTTTCACTTTTTACTGTCAAAACATAATAAAAAAACTTCACAAAAANA