Contig 012208:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001F17Sequence524001796 (4)ref|XP_006366869.1|4e-63PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'784012208 (2)ref|XP_009797723.1|1e-117PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
JMFN009B09Sequence592012208 (2)ref|XP_009630828.1|9e-59PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001F17-                                                                  TACT
                      ____________________________________________________________
consensus                                                                     TACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+                                                CTCCTATGTACACCCATATCTGA
rJMFF001F17-          TGACACTGTTTTAAGCAAAAACCAACCTTGTGGAGGACTCCTATGTACACCCATATCTGA
                      ____________________________________________________________
consensus             TGACACTGTTTTAAGCAAAAACCAACCTTGTGGAGGACTCCTATGTACACCCATATCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           TCAGACAATGCTGNTCTAACTTTCCACACCCAAAAAACCAAAAAGAAAATAATAAATAAC
rJMFF001F17-          TCAGACAATGCTTGTCTAACTTTCCACACCCAAAAAACCAAAAAGAAAATAATAAATAAA
                      ____________________________________________________________
consensus             TCAGACAATGCTTGTCTAACTTTCCACACCCAAAAAACCAAAAAGAAAATAATAAATAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           CAAAAACCAAGAGGGATGAGCTAAGAGATGCCTTCTATTGATCAATCAGCAGCTAACAAG
rJMFF001F17-          CAAAAACCAAGAGGGATGAGCTAAGAGATGCCTTCTATTGATCAATCAGCAGCTAACAAG
                      ____________________________________________________________
consensus             CAAAAACCAAGAGGGATGAGCTAAGAGATGCCTTCTATTGATCAATCAGCAGCTAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           GCATGTGTGCGGTTTCGCTAGACCTGAAAGATCGCTAGGCACGGGTTGATAACTAGCAGC
rJMFF001F17-          GCATGTGTGCGGTTTCGCTAGACCTGAAAGATCGCTAGGCACGGGTTGATAACTAGCAGC
                      ____________________________________________________________
consensus             GCATGTGTGCGGTTTCGCTAGACCTGAAAGATCGCTAGGCACGGGTTGATAACTAGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           CATCTCGAGGCGTTCCCATGTTAGCCTTCGCCTCTCAGCAGCACCATTCGACACCGAATT
rJMFF001F17-          CATCTCGAGGCGTTCCCATGTTAGCCTTCGCCTCTCAGCAGCACCATTCGACACCGAATT
                      ____________________________________________________________
consensus             CATCTCGAGGCGTTCCCATGTTAGCCTTCGCCTCTCAGCAGCACCATTCGACACCGAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           TTCTTCCTCATATTTAGTTTGGCAGGCGAGCACGAGCTCCTCGTCCATCTCGGAGAACAC
rJMFF001F17-          TTCTTCCTCATATTTAGTTTGGCAGGCGAGCACGAGCTCCTCGTCCATCTCGGAGAACAC
                      ____________________________________________________________
consensus             TTCTTCCTCATATTTAGTTTGGCAGGCGAGCACGAGCTCCTCGTCCATCTCGGAGAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           TTTTCTCACGTTTAGTGTCAGGTTTAGGATCGGTTTGCTCCAGTGGCTCTGGCTGTTCCT
rJMFF001F17-          TTTTCTCACGTTTAGTGTCAGGTTTAGGATCGGTTTGCTCCAGTGGCTCTGGCTGTTCCT
                      ____________________________________________________________
consensus             TTTTCTCACGTTTAGTGTCAGGTTTAGGATCGGTTTGCTCCAGTGGCTCTGGCTGTTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           CTCTAAAGCCGACACAAGAATGGGCATGATCACTTGCTTGTTACGCATAACAAGGTTAAG
rJMFF001F17-          CTCTAAAGCCGACACAAGAATGGGCATGATCACTTGCTTGTTACGCATAACAAGGTTAAG
                      ____________________________________________________________
consensus             CTCTAAAGCCGACACAAGAATGGGCATGATCACTTGCTTGTTACGCATAACAAGGTTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN009B09+           GATGCTGTCGTTGCTCCATAAGAGATGTGCTCGTTCCGCCACCTG               
rJMFF001F17-          GATGCTGTCGTTGCTCCACAAGAGATGTGCTCGTTCCGCCACCTGGAAATGGGAACTATT
                      ____________________________________________________________
consensus             GATGCTGTCGTTGCTCCATAAGAGATGTGCTCGTTCCGCCACCTGGAAATGGGAACTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001F17-          GAGGCAACATCCAATACGTCGAAATAGAGGCACCATGATCTTCTCAAACTCGGAGACGCT
                      ____________________________________________________________
consensus             GAGGCAACATCCAATACGTCGAAATAGAGGCACCATGATCTTCTCAAACTCGGAGACGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001F17-          TATCATTTCCAAAACCTCTTCTATCTCACTGATGAACATCAACTCCTTTTGGCTATTTGT
                      ____________________________________________________________
consensus             TATCATTTCCAAAACCTCTTCTATCTCACTGATGAACATCAACTCCTTTTGGCTATTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001F17-          CACGGGCCAATATCTCAAGAGCCTCGTTATCGCAGTGCTAGCAAGATTTTGCTCCTTTTC
                      ____________________________________________________________
consensus             CACGGGCCAATATCTCAAGAGCCTCGTTATCGCAGTGCTAGCAAGATTTTGCTCCTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF001F17-          TACAAATTGTACAACGCAGTACGCTAGCTGTTGATGATAGACGCCCAACGACTTTGGCTT
                      ____________________________________________________________
consensus             TACAAATTGTACAACGCAGTACGCTAGCTGTTGATGATAGACGCCCAACGACTTTGGCTT