Contig 012206:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D09Sequence541012020 (2)ref|XP_009606902.1|2e-06PREDICTED: probable WRKY transcription factor 33 isoform X1 [Nicotiana tomentos491012206 (2)ref|XP_009605529.1|6e-48PREDICTED: WRKY transcription factor 1-like [Nicotiana tomentosiformis]
JMSF024K15Sequence660012020 (2)ref|XP_009606902.1|5e-09PREDICTED: probable WRKY transcription factor 33 isoform X1 [Nicotiana tomentos772012206 (2)ref|XP_009605529.1|3e-77PREDICTED: WRKY transcription factor 1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF024K15+                                               TATCCAAATGAGAAGACCAGACT
                      ____________________________________________________________
consensus                                                  TATCCAAATGAGAAGACCAGACT
 
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rJMSF024K15+          TGCCTATCATGACTCCTTCTGAAGGTACGCAATCTGTTACACAGGGGGAAAAGTGCGAAA
                      ____________________________________________________________
consensus             TGCCTATCATGACTCCTTCTGAAGGTACGCAATCTGTTACACAGGGGGAAAAGTGCGAAA
 
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rJMSF024K15+          CTCCTGAGCCAAAACAGATTACATCACCAGTAGGTGTTGCTTCGGCTGATATAGGTGCAA
                      ____________________________________________________________
consensus             CTCCTGAGCCAAAACAGATTACATCACCAGTAGGTGTTGCTTCGGCTGATATAGGTGCAA
 
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rJMSF024K15+          GGGATTCAGTCCTCCAGTCACATAATTTGCGAGATGAGGATGATCACTGTGGTGGTCCGG
                      ____________________________________________________________
consensus             GGGATTCAGTCCTCCAGTCACATAATTTGCGAGATGAGGATGATCACTGTGGTGGTCCGG
 
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rJMSF024K15+          ATTCAAAAAAGCAGAAGAAATGCCTTTCTAGTTCTGATGACAATAAGCCTCATGGTGAGC
                      ____________________________________________________________
consensus             ATTCAAAAAAGCAGAAGAAATGCCTTTCTAGTTCTGATGACAATAAGCCTCATGGTGAGC
 
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rJMSF024K15+          CCAGGCATGTTGTTCAGACTATGAGTGAGGTGGATATAGTGAATGATGGCTACCGCTGGC
rJMFF001D09+                                                            TACCGCTGGC
                      ____________________________________________________________
consensus             CCAGGCATGTTGTTCAGACTATGAGTGAGGTGGATATAGTGAATGATGGCTACCGCTGGC
 
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rJMSF024K15+          GCAAGTATGGACAGAAATTAGTAAAAGGAAACCCAAACCCCAGGAGCTATTACAGATGCT
rJMFF001D09+          GCAAGTATGGACAGAAATTAGTAAAAGGAAACCCAAACCCCAGGAGCTATTACAGATGCT
                      ____________________________________________________________
consensus             GCAAGTATGGACAGAAATTAGTAAAAGGAAACCCAAACCCCAGGAGCTATTACAGATGCT
 
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rJMSF024K15+          CAAATGCAGGGTGTCCAGTGAAGAAACACGTCGAGAGGGCGTCCCATGATCCGAAAGTGG
rJMFF001D09+          CAAATGCAGGGTGTCCAGTGAAGAAACACGTCGAGAGGGCGTCCCATGATCCGAAAGTGG
                      ____________________________________________________________
consensus             CAAATGCAGGGTGTCCAGTGAAGAAACACGTCGAGAGGGCGTCCCATGATCCGAAAGTGG
 
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rJMSF024K15+          TTATCACAACATACGAAGGGCAGCACGACCACGACATACCACCTTCTAGGACTATTACCC
rJMFF001D09+          TTATCACAACATACGAAGGGCAGCACGACCACGACATACCACCTTCTAGGACTATTACCC
                      ____________________________________________________________
consensus             TTATCACAACATACGAAGGGCAGCACGACCACGACATACCACCTTCTAGGACTATTACCC
 
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rJMSF024K15+          AAAATTCAGGAGAGGGCGATGCCACAAGTGGAGAGTCAAGACCCGAATCAGGTGAAAACA
rJMFF001D09+          AAAATTCAGGAGAGGGCGATGCCACAAGTGGAGAGTCAAGACCCGAATCAGGTGAAAACA
                      ____________________________________________________________
consensus             AAAATTCAGGAGAGGGCGATGCCACAAGTGGAGAGTCAAGACCCGAATCAGGTGAAAACA
 
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rJMSF024K15+          AACATGTGGGCCTCGATATGGTTGTTCACATTGGTGCTAATTGAAGATGGAATACCTATG
rJMFF001D09+          AACATGTGGGCCTCGATATGGTTGTTCACATTGGTGCTAATTGAAGATGGAATACCTATG
                      ____________________________________________________________
consensus             AACATGTGGGCCTCGATATGGTTGTTCACATTGGTGCTAATTGAAGATGGAATACCTATG
 
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rJMSF024K15+          CTGAATTAGAGCATCGCGCTGAGGTTTATGATCACGATTGCCCGATCATTATGGTCCATA
rJMFF001D09+          CTGAATTAGAGCATCGCGCTGAGGTTTATGATCACGATTGCCCGATAATTATGGTCCATA
                      ____________________________________________________________
consensus             CTGAATTAGAGCATCGCGCTGAGGTTTATGATCACGATTGCCCGATCATTATGGTCCATA
 
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rJMSF024K15+          GATTTAACTGCTTAGTTTGTGACAGGGTGTGGAAAAAGCTCATATTCATTGTACAAATTA
rJMFF001D09+          GATTTAACTGCTTAGTTTGTGACAGGGTGTGGAAAAAGCTCATATTCATTGTACAAATTA
                      ____________________________________________________________
consensus             GATTTAACTGCTTAGTTTGTGACAGGGTGTGGAAAAAGCTCATATTCATTGTACAAATTA
 
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rJMSF024K15+          TATTATTGACCAACCAAATGTAGAT                                   
rJMFF001D09+          TATTATTGACCAACCAAATGTAGATTGTCATAAATATCTAATCTTGATACCTCATCTTAC
                      ____________________________________________________________
consensus             TATTATTGACCAACCAAATGTAGATTGTCATAAATATCTAATCTTGATACCTCATCTTAC