Contig 012205:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022M08Sequence466012205 (3)gb|KCW83274.1|6e-67hypothetical protein EUGRSUZ_B00211 [Eucalyptus grandis]737009955 (4)ref|XP_010319028.1|5e-98PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Solanum lycopersicu
JMFF034J08Sequence569012205 (3)ref|XP_002511301.1|5e-92afc, putative [Ricinus communis] gb|EEF51903.1| afc, putative [Ricinus communis]705009955 (4)ref|XP_006439952.1|4e-93hypothetical protein CICLE_v10020223mg [Citrus clementina] gb|ESR53192.1| hypoth
JMSF053E01Sequence676012205 (3)ref|XP_002511301.1|5e-50afc, putative [Ricinus communis] gb|EEF51903.1| afc, putative [Ricinus communis]923019467ref|XP_004236278.1|1e-95PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Solanum lycopersicu

Alignment

This contig is upended


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JMSF053E01+                                                       AGGTCAATAGGAAATG
                      ____________________________________________________________
consensus                                                         AGGTCAATAGGAAATG
 
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JMSF053E01+           AGCGGTAATTGTTTTTCCGTAGAAAATCGTATAAGCTTGGTCCAAGCTTCTCAAAGACCT
                      ____________________________________________________________
consensus             AGCGGTAATTGTTTTTCCGTAGAAAATCGTATAAGCTTGGTCCAAGCTTCTCAAAGACCT
 
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JMSF053E01+           GTTATCATTTAAGTTCATCCACAATTTTAATCCCCATAACATTTGTTAACTGGGGAAATT
                      ____________________________________________________________
consensus             GTTATCATTTAAGTTCATCCACAATTTTAATCCCCATAACATTTGTTAACTGGGGAAATT
 
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JMSF053E01+           AATCCAATCCACTAACCAACCATATAATACTTACAATACAAACATGGTTACGATAGTCAA
                      ____________________________________________________________
consensus             AATCCAATCCACTAACCAACCATATAATACTTACAATACAAACATGGTTACGATAGTCAA
 
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JMSF053E01+           ACCAGTTCCGTATTTGAACACAACTGCAAGGAACAAACAAATTCAACCACTGCCAATTTA
                      ____________________________________________________________
consensus             ACCAGTTCCGTATTTGAACACAACTGCAAGGAACAAACAAATTCAACCACTGCCAATTTA
 
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JMSF053E01+           CAAGAGGCCAAAATGGGACCATAGCAAAAGTAATTAATGTTACAATAGGCACAGGCACTA
                      ____________________________________________________________
consensus             CAAGAGGCCAAAATGGGACCATAGCAAAAGTAATTAATGTTACAATAGGCACAGGCACTA
 
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JMFF022M08+                   CGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
JMFF034J08+                   CGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
JMSF053E01+           TTACTCACCGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
                      ____________________________________________________________
consensus             TTACTCACCGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
 
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JMFF022M08+           TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
JMFF034J08+           TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
JMSF053E01+           TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
                      ____________________________________________________________
consensus             TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
 
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JMFF022M08+           TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
JMFF034J08+           TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
JMSF053E01+           TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
                      ____________________________________________________________
consensus             TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
 
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JMFF022M08+           GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMFF034J08+           GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMSF053E01+           GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
                      ____________________________________________________________
consensus             GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
 
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JMFF022M08+           TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMFF034J08+           TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMSF053E01+           TCGCCGGTCGAGTTGTGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
                      ____________________________________________________________
consensus             TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
 
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JMFF022M08+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGA                        
JMFF034J08+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGA                        
JMSF053E01+           GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGTC
                      ____________________________________________________________
consensus             GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGTC