clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF022M08 | Sequence | 466 | 012205 (3) | gb|KCW83274.1| | 6e-67 | hypothetical protein EUGRSUZ_B00211 [Eucalyptus grandis] | 737 | 009955 (4) | ref|XP_010319028.1| | 5e-98 | PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Solanum lycopersicu |
JMFF034J08 | Sequence | 569 | 012205 (3) | ref|XP_002511301.1| | 5e-92 | afc, putative [Ricinus communis] gb|EEF51903.1| afc, putative [Ricinus communis] | 705 | 009955 (4) | ref|XP_006439952.1| | 4e-93 | hypothetical protein CICLE_v10020223mg [Citrus clementina] gb|ESR53192.1| hypoth |
JMSF053E01 | Sequence | 676 | 012205 (3) | ref|XP_002511301.1| | 5e-50 | afc, putative [Ricinus communis] gb|EEF51903.1| afc, putative [Ricinus communis] | 923 | 019467 | ref|XP_004236278.1| | 1e-95 | PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Solanum lycopersicu |
This contig is upended
. : . : . : . : . : . :
JMSF053E01+ AGGTCAATAGGAAATG
____________________________________________________________
consensus AGGTCAATAGGAAATG
. : . : . : . : . : . :
JMSF053E01+ AGCGGTAATTGTTTTTCCGTAGAAAATCGTATAAGCTTGGTCCAAGCTTCTCAAAGACCT
____________________________________________________________
consensus AGCGGTAATTGTTTTTCCGTAGAAAATCGTATAAGCTTGGTCCAAGCTTCTCAAAGACCT
. : . : . : . : . : . :
JMSF053E01+ GTTATCATTTAAGTTCATCCACAATTTTAATCCCCATAACATTTGTTAACTGGGGAAATT
____________________________________________________________
consensus GTTATCATTTAAGTTCATCCACAATTTTAATCCCCATAACATTTGTTAACTGGGGAAATT
. : . : . : . : . : . :
JMSF053E01+ AATCCAATCCACTAACCAACCATATAATACTTACAATACAAACATGGTTACGATAGTCAA
____________________________________________________________
consensus AATCCAATCCACTAACCAACCATATAATACTTACAATACAAACATGGTTACGATAGTCAA
. : . : . : . : . : . :
JMSF053E01+ ACCAGTTCCGTATTTGAACACAACTGCAAGGAACAAACAAATTCAACCACTGCCAATTTA
____________________________________________________________
consensus ACCAGTTCCGTATTTGAACACAACTGCAAGGAACAAACAAATTCAACCACTGCCAATTTA
. : . : . : . : . : . :
JMSF053E01+ CAAGAGGCCAAAATGGGACCATAGCAAAAGTAATTAATGTTACAATAGGCACAGGCACTA
____________________________________________________________
consensus CAAGAGGCCAAAATGGGACCATAGCAAAAGTAATTAATGTTACAATAGGCACAGGCACTA
. : . : . : . : . : . :
JMFF022M08+ CGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
JMFF034J08+ CGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
JMSF053E01+ TTACTCACCGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
____________________________________________________________
consensus TTACTCACCGATTGCCTCCTTTATCATGTTTACCAAGCTGTTGAAGCACATCAACCTCAA
. : . : . : . : . : . :
JMFF022M08+ TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
JMFF034J08+ TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
JMSF053E01+ TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
____________________________________________________________
consensus TCATAGCTGCCTCACGATACTTCTTAATGCCACGAACAATTTTAATGGCAACCATTTCTT
. : . : . : . : . : . :
JMFF022M08+ TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
JMFF034J08+ TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
JMSF053E01+ TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
____________________________________________________________
consensus TCCTTTCTCGGTCCCAACATTCTAGAACCTGTCCAAAGGTGCCCTCACCCATTTTGCTGT
. : . : . : . : . : . :
JMFF022M08+ GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMFF034J08+ GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
JMSF053E01+ GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
____________________________________________________________
consensus GTATCTTATCTTAGGGACCTCAGGGAGGACGTCCCAGCCCAATCGAGGCCGCTTCCGTGG
. : . : . : . : . : . :
JMFF022M08+ TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMFF034J08+ TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
JMSF053E01+ TCGCCGGTCGAGTTGTGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
____________________________________________________________
consensus TCGCCGGTCGAGTTGCGGGAGGGGAAACTCGGTCACGCGCTCTGTCTCCATCGTTGCAGA
. : . : . : . : . : . :
JMFF022M08+ GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGA
JMFF034J08+ GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGA
JMSF053E01+ GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGTC
____________________________________________________________
consensus GAAATTTAGAAAGAGAGAGAAAGTTGAAGGAGATGATGATAGAGAGAATAAGGATGCGTC