Contig 012202:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006I06Sequence332012202 (5)emb|CAN77028.1|7e-32hypothetical protein VITISV_015339 [Vitis vinifera]549011689 (6)ref|XP_007041452.1|2e-83Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF010J06Sequence332012202 (5)emb|CAN77028.1|3e-16hypothetical protein VITISV_015339 [Vitis vinifera]769011689 (6)ref|XP_007041452.1|4e-135Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF033B18Sequence697012202 (5)ref|XP_006361853.1|6e-99PREDICTED: serine--tRNA ligase-like [Solanum tuberosum]755011689 (6)ref|XP_007041452.1|1e-115Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF036E22Sequence699012202 (5)ref|XP_009784692.1|2e-99PREDICTED: serine--tRNA ligase [Nicotiana sylvestris]687011689 (6)ref|XP_007041452.1|5e-99Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF052G03Sequence642012202 (5)ref|XP_010255943.1|6e-67PREDICTED: serine--tRNA ligase-like [Nelumbo nucifera]936011689 (6)ref|XP_007041452.1|6e-174Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9

Alignment

This contig is upended


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JMSF036E22+                                       TTCTCAAAAAATCAAGGGCAAACATGATTAGT
JMSF033B18+                                         CTCAAAAAATCAAGGGCAAACATGATTAGT
                      ____________________________________________________________
consensus                                         TTCTCAAAAAATCAAGGGCAAACATGATTAGT
 
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JMSF036E22+           GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
JMSF033B18+           GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
                      ____________________________________________________________
consensus             GCTTGGTTCAGATCAACGCCAGCATCTTTCAGATAGTAGCCTCTACCTCCAGCAATTTTT
 
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JMSF036E22+           GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
JMSF033B18+           GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
                      ____________________________________________________________
consensus             GCACCCTTATCCAAATCTGCAATCCCAAGAAGCTTGACAAGATCAACATGGTTTTTAAGC
 
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JMSF036E22+           CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF033B18+           CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
JMSF052G03+                             TCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
                      ____________________________________________________________
consensus             CCTGATTCAGTTCTCTTATCACCCCATTGACGAATGATAGCATTATTGTCCTCATTATCA
 
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JMSF036E22+           CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF033B18+           CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
JMSF052G03+           CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
                      ____________________________________________________________
consensus             CTAACTGGAACTGAGTCATGCACAAGGTTTCCAATAACTTCCAACCTTTTATACAATGCT
 
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JMSF036E22+           GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF033B18+           GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
JMSF052G03+           GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
                      ____________________________________________________________
consensus             GCTCGGGCCTCCTGCACTTCTTCCTCCTTTATTGCAGTCAATTTCTTGTTCTCCTCGGTA
 
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JMSF036E22+           TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF006I06+                                              CTTCAGCTTGGCCACTTCTTTGTTG
JMSF033B18+           TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
JMSF052G03+           TTCTTAATTAACTCACTTGCATCTTCTTTGGCTATCTTCAGCTTGGCCACTGCTTTGTTG
                      ____________________________________________________________
consensus             TTCTTAATTAACTCACTTGCATCTTGTTTGGCTATCTTCAGCTTGGCCACTTCTTTGTTG
 
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JMSF036E22+           ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF006I06+           ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF033B18+           ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
JMSF010J06+                                                                 ACTTTG
JMSF052G03+           ATCTTGTTAAATTCTTTACGCAAATTATCGAACTCAAATTGACGCTGACGCCACACTTTG
                      ____________________________________________________________
consensus             ATCTTGTTAAATTCTTTACGCAAATTATCGAATTCAAATTGACGCTGACGCCAGACTTTG
 
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JMSF036E22+           TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF006I06+           TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF033B18+           TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF010J06+           TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
JMSF052G03+           TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
                      ____________________________________________________________
consensus             TCAAGCTCAATGACCTCGTCAACAATATCAACGTTAGCAAACCGCCGCCGTTGAGATTCT
 
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JMSF036E22+           CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF006I06+           CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF033B18+           CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF010J06+           CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
JMSF052G03+           CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
                      ____________________________________________________________
consensus             CGGATGACTTCAGGGTTGTGGCCCTTGTCTTCTCGGAATAGATTTATGTCAAGCATTTTC
 
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JMSF036E22+           TTATGGTTTGATCT                                              
JMSF006I06+           TTATGGTTTGATCT                                              
JMSF033B18+           TTATGGTTTGATCT                                              
JMSF010J06+           TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
JMSF052G03+           TAATGATTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
                      ____________________________________________________________
consensus             TTATGGTTTGATCTGGCAGCTGGCGAGGCAGAAGACGGTGGCGACGACTGGCGTCTGGCG
 
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JMSF010J06+           AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
JMSF052G03+           AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
                      ____________________________________________________________
consensus             AGGCAGAGGCGATGGGGACGGGCGAGTAAGAGGCGCCGTCTGGTCTCTGGTGGACTGGTG
 
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JMSF010J06+           GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
JMSF052G03+           GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
                      ____________________________________________________________
consensus             GTGGCGAGGCAGGCGCAATGGCTACTCGGCGAGAGCAGAGAAGAAGGAGTCTCGTCGTCT
 
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JMSF010J06+           CGCGTGCGGCGTCTCAAAAC                                        
JMSF052G03+           CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC
                      ____________________________________________________________
consensus             CGCGTGCGGCGTCTCAAAACCACATAATGAAAGTGTAAAAATAATAATAATAATAAAATC