Contig 012199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013J17Sequence540012199 (4)emb|CDO97632.1|2e-57unnamed protein product [Coffea canephora]
JMSF043J11Sequence702012199 (4)ref|XP_009774623.1|5e-82PREDICTED: ras-related protein RABD1 [Nicotiana sylvestris]
JMSF051N10Sequence665012199 (4)ref|XP_010272548.1|2e-123PREDICTED: ras-related protein RABD1 [Nelumbo nucifera]707012199 (4)emb|CDO97632.1|8e-117unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN013J17+                     ATCAAAAGTGCAAGGAGCAGTGTAATACAAACATCATTTGCACTGATTTT
                      ____________________________________________________________
consensus                       ATCAAAAGTGCAAGGAGCAGTGTAATACAAACATCATTTGCACTGATTTT
 
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JMFN013J17+           GCAGGCTGAAAGTCACCAATACATGTTCGGAGCAATGTACAGATGGCAACAATTGTCACA
rJMSF043J11-                                              GTACAGATGGCAACAATTGTCACA
rJMSF051N10-                                              GTACAGATGGCAACAATTGTCACA
                      ____________________________________________________________
consensus             GCAGGCTGAAAGTCACCAATACATGTTCGGAGCAATGTACAGATGGCAACAATTGTCACA
 
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JMFN013J17+           CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
rJMSF043J11-          CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
rJMSF051N10-          CAGNTTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
                      ____________________________________________________________
consensus             CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
 
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JMFN013J17+           ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
rJMSF043J11-          ATACTGATACATTTTAACTACTTCTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
rJMSF051N10-          ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
                      ____________________________________________________________
consensus             ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
 
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JMFN013J17+           CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
rJMSF043J11-          CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
rJMSF051N10-          CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
JMSF051N10+                                                                  GAACA
                      ____________________________________________________________
consensus             CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
 
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JMFN013J17+           GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
rJMSF043J11-          GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
rJMSF051N10-          GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
JMSF051N10+           GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
                      ____________________________________________________________
consensus             GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
 
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JMFN013J17+           GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
rJMSF043J11-          GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
rJMSF051N10-          GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
JMSF051N10+           GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
                      ____________________________________________________________
consensus             GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
 
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JMFN013J17+           GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
rJMSF043J11-          GGAATGCCAAGCTCATCGGCNAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
rJMSF051N10-          GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
JMSF051N10+           GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
                      ____________________________________________________________
consensus             GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
 
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JMFN013J17+           ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
rJMSF043J11-          ACCAAATCA-GTTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
rJMSF051N10-          ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
JMSF051N10+           ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
                      ____________________________________________________________
consensus             ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
 
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JMFN013J17+           ATTTCATTCAG                                                 
rJMSF043J11-          ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCNCCTTTTCAGTTACATCATAGACA
rJMSF051N10-          ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
JMSF051N10+           ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
                      ____________________________________________________________
consensus             ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
 
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rJMSF043J11-          ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
rJMSF051N10-          ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
JMSF051N10+           ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
                      ____________________________________________________________
consensus             ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
 
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rJMSF043J11-          CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
rJMSF051N10-          CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
JMSF051N10+           CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
                      ____________________________________________________________
consensus             CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
 
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rJMSF043J11-          TTAAAATCAACTCCGATCGTGCTAATGTAACTGTC                         
rJMSF051N10-          TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
JMSF051N10+           TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
                      ____________________________________________________________
consensus             TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
 
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JMSF051N10+           AGAAGAAGGCAAGACTTTCCCACGGAAGAGTCTCCAATCAGCAACAGTTTGAACAGATAA
                      ____________________________________________________________
consensus             AGAAGAAGGCAAGACTTTCCCACGGAAGAGTCTCCAATCAGCAACAGTTTGAACAGATAA
 
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JMSF051N10+           TCGTATTCAGTACTCATGTTTCCCCTTTGCTGAATGGAGTTCTGATCTGCTCTGCTCCGC
                      ____________________________________________________________
consensus             TCGTATTCAGTACTCATGTTTCCCCTTTGCTGAATGGAGTTCTGATCTGCTCTGCTCCGC
 
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JMSF051N10+           TCCGCTCCTTCGGTTGGTTGTCTTCAACGCTTTGTAGACTTTGAGACGAAGAAGAGAATC
                      ____________________________________________________________
consensus             TCCGCTCCTTCGGTTGGTTGTCTTCAACGCTTTGTAGACTTTGAGACGAAGAAGAGAATC