Contig 012199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013J17Sequence540012199 (4)emb|CDO97632.1|2e-57unnamed protein product [Coffea canephora]
JMSF043J11Sequence702012199 (4)ref|XP_009774623.1|5e-82PREDICTED: ras-related protein RABD1 [Nicotiana sylvestris]
JMSF051N10Sequence665012199 (4)ref|XP_010272548.1|2e-123PREDICTED: ras-related protein RABD1 [Nelumbo nucifera]707012199 (4)emb|CDO97632.1|8e-117unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN013J17+ ATCAAAAGTGCAAGGAGCAGTGTAATACAAACATCATTTGCACTGATTTT
                      ____________________________________________________________
consensus ATCAAAAGTGCAAGGAGCAGTGTAATACAAACATCATTTGCACTGATTTT
 
. : . : . : . : . : . :
JMFN013J17+ GCAGGCTGAAAGTCACCAATACATGTTCGGAGCAATGTACAGATGGCAACAATTGTCACA
rJMSF043J11- GTACAGATGGCAACAATTGTCACA
rJMSF051N10- GTACAGATGGCAACAATTGTCACA
                      ____________________________________________________________
consensus GCAGGCTGAAAGTCACCAATACATGTTCGGAGCAATGTACAGATGGCAACAATTGTCACA
 
. : . : . : . : . : . :
JMFN013J17+ CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
rJMSF043J11- CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
rJMSF051N10- CAGNTTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
                      ____________________________________________________________
consensus CAG-TTTACAGGGATGAAGAGAACATTGTGAGACCATTTGTGCAGTGTCCACAACACAAT
 
. : . : . : . : . : . :
JMFN013J17+ ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
rJMSF043J11- ATACTGATACATTTTAACTACTTCTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
rJMSF051N10- ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
                      ____________________________________________________________
consensus ATACTGATACATTTTAACTACTTTTGTTCAATGTTGTTTACAGTAACAGAAACTAAATCA
 
. : . : . : . : . : . :
JMFN013J17+ CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
rJMSF043J11- CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
rJMSF051N10- CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
JMSF051N10+ GAACA
                      ____________________________________________________________
consensus CAGCAATGTTAGCCACAGCAGTTGCTCTTCTGCTCAATTGGCTGTCCCTTGATTTGAACA
 
. : . : . : . : . : . :
JMFN013J17+ GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
rJMSF043J11- GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
rJMSF051N10- GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
JMSF051N10+ GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
                      ____________________________________________________________
consensus GTGTTAGCCGATTTCTTGTTTCCAGCTGGCTGGGTGCCCATTTTTTTCTTAATCTCGCTA
 
. : . : . : . : . : . :
JMFN013J17+ GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
rJMSF043J11- GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
rJMSF051N10- GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
JMSF051N10+ GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
                      ____________________________________________________________
consensus GCCATGGTTAAGAAAGCATGCTCCACATTGATGGAGTCTTTGGCACTGGTCTCAAGGAAA
 
. : . : . : . : . : . :
JMFN013J17+ GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
rJMSF043J11- GGAATGCCAAGCTCATCGGCNAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
rJMSF051N10- GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
JMSF051N10+ GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
                      ____________________________________________________________
consensus GGAATGCCAAGCTCATCGGCAAATGCCTTTGCTGTCTCTGTGTCCACAACTTTGTTCTCC
 
. : . : . : . : . : . :
JMFN013J17+ ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
rJMSF043J11- ACCAAATCA-GTTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
rJMSF051N10- ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
JMSF051N10+ ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
                      ____________________________________________________________
consensus ACCAAATCACATTTATTTCCGACTAAGAGTTTGCATACACTCTCATTTGCATATCTGTCA
 
. : . : . : . : . : . :
JMFN013J17+ ATTTCATTCAG
rJMSF043J11- ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCNCCTTTTCAGTTACATCATAGACA
rJMSF051N10- ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
JMSF051N10+ ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
                      ____________________________________________________________
consensus ATTTCATTCAGCCATTGCTTGACATTGTTGAAGCTCTCCTTTTCAGTTACATCATAGACA
 
. : . : . : . : . : . :
rJMSF043J11- ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
rJMSF051N10- ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
JMSF051N10+ ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
                      ____________________________________________________________
consensus ACAATAATCCCGTGTGCTCCACGATAGTAACTGCTTGTTATAGTCCGGAAACGCTCCTGG
 
. : . : . : . : . : . :
rJMSF043J11- CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
rJMSF051N10- CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
JMSF051N10+ CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
                      ____________________________________________________________
consensus CCAGCAGTATCCCAAATTTGGAGCTTGATTGTCTTGCCCTCGAGCTCCACAGTCCTAATT
 
. : . : . : . : . : . :
rJMSF043J11- TTAAAATCAACTCCGATCGTGCTAATGTAACTGTC
rJMSF051N10- TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
JMSF051N10+ TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
                      ____________________________________________________________
consensus TTAAAATCAACTCCAATCGTGCTAATGTAACTGTCAACATATGAATCATCGGCGAATCTG
 
. : . : . : . : . : . :
JMSF051N10+ AGAAGAAGGCAAGACTTTCCCACGGAAGAGTCTCCAATCAGCAACAGTTTGAACAGATAA
                      ____________________________________________________________
consensus AGAAGAAGGCAAGACTTTCCCACGGAAGAGTCTCCAATCAGCAACAGTTTGAACAGATAA
 
. : . : . : . : . : . :
JMSF051N10+ TCGTATTCAGTACTCATGTTTCCCCTTTGCTGAATGGAGTTCTGATCTGCTCTGCTCCGC
                      ____________________________________________________________
consensus TCGTATTCAGTACTCATGTTTCCCCTTTGCTGAATGGAGTTCTGATCTGCTCTGCTCCGC
 
. : . : . : . : . : . :
JMSF051N10+ TCCGCTCCTTCGGTTGGTTGTCTTCAACGCTTTGTAGACTTTGAGACGAAGAAGAGAATC
                      ____________________________________________________________
consensus TCCGCTCCTTCGGTTGGTTGTCTTCAACGCTTTGTAGACTTTGAGACGAAGAAGAGAATC