Contig 012198:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS114E06Sequence553012198 (2)ref|XP_009759129.1|8e-21PREDICTED: high mobility group B protein 6-like isoform X2 [Nicotiana sylvestri
JMSF051M24Sequence618012198 (2)ref|XP_009599657.1|2e-26PREDICTED: high mobility group B protein 6-like isoform X1 [Nicotiana tomentosi

Alignment

This contig is upended


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JMSF051M24+                                                     TTGCACCATAACAGATAA
                      ____________________________________________________________
consensus                                                       TTGCACCATAACAGATAA
 
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JMFS114E06+                                               TTCTTCCCTTGTTCTTTCTCTTCC
JMSF051M24+           GGTGTTGCCGGCCTTTTCGTTCCGGGATTCTTGCCTTTCTTCCCTTGTTCTTTCTCTTCC
                      ____________________________________________________________
consensus             GGTGTTGCCGGCCTTTTCGTTCCGGGATTCTTGCCTTTCTTCCCTTGTTCTTTCTCTTCC
 
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JMFS114E06+           AGGGATTTCAGAATTGGCAAGTTGAGAGTGGGTTTGAATTCTTTCATCTTCTGCAATTTC
JMSF051M24+           AGGGATTTCAGAATTGGCAAGTTGAGAGTGGGTTTGAATTCTTTCATCTTCTGCAATTTC
                      ____________________________________________________________
consensus             AGGGATTTCAGAATTGGCAAGTTGAGAGTGGGTTTGAATTCTTTCATCTTCTGCAATTTC
 
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JMFS114E06+           TTGAGTTCCAATTGAAGCTTCTCCTGTTCTTTGCCGCGGATTTCAAGCTCTTCCTCTTTC
JMSF051M24+           TTGAGTTCCAATTGAAGCTTCTCCTGTTCTTTGCCGCGGATTTCAAGCTCTTCCTCTTTC
                      ____________________________________________________________
consensus             TTGAGTTCCAATTGAAGCTTCTCCTGTTCTTTGCCGCGGATTTCAAGCTCTTCCTCTTTC
 
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JMFS114E06+           TGCTTCAGCATTTCCTCCCTGGCCTTCAACAGTTCCTCCGTCTGTTCCTTCTCAATCTTC
JMSF051M24+           TGCTTCAGCATTTCCTCCCTGGCCTTCAACAGTTCCTCCGTCTGTTCCTTCTCAATCTTC
                      ____________________________________________________________
consensus             TGCTTCAGCATTTCCTCCCTGGCCTTCAACAGTTCCTCCGTCTGTTCCTTCTCAATCTTC
 
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JMFS114E06+           AGTCTCTGGAGCCTGTCCTGCATTTCCTGGAGTTCCTTCTCGAACGAAGACGACTCCTCG
JMSF051M24+           AGTCTCTGGAGCCTGTCCTGCATTTCCTGGAGTTCCTTCTCGAACGAAGACGACTCCTCG
                      ____________________________________________________________
consensus             AGTCTCTGGAGCCTGTCCTGCATTTCCTGGAGTTCCTTCTCGAACGAAGACGACTCCTCG
 
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JMFS114E06+           GACTGCTTTTTCGCCTTCGAGCCCCCTCCTCCTCTCTTGGATTTCTTCTGATTCTGAGAT
JMSF051M24+           GACTGCTTTTTCGCCTTCGAGCCCCCTCCTCCTCTCTTGGATTTCTTCTGATTCTGAGAT
                      ____________________________________________________________
consensus             GACTGCTTTTTCGCCTTCGAGCCCCCTCCTCCTCTCTTGGATTTCTTCTGATTCTGAGAT
 
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JMFS114E06+           AGACTCTCATGGTTCTCTTTCCCAGCGGACTCTTCTACCGGGAGGGGAACGTCTGGGGAT
JMSF051M24+           AGACTCTCATGGTTCTCTTTCCCAGCGGACTCTTCTACCGGGAGGGGAACGTCTGGGGAT
                      ____________________________________________________________
consensus             AGACTCTCATGGTTCTCTTTCCCAGCGGACTCTTCTACCGGGAGGGGAACGTCTGGGGAT
 
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JMFS114E06+           TGGGAGGCAGCGGCGGCCAAGACATTGGCCTCGCTTGATGAAGCGTTTTTCTGCTTCAGT
JMSF051M24+           TGGGAGGCAGCGGCGGCCAAGACATTGGCCTCGCTTGATGAAGCGTTTTTCTGCTTCAGT
                      ____________________________________________________________
consensus             TGGGAGGCAGCGGCGGCCAAGACATTGGCCTCGCTTGATGAAGCGTTTTTCTGCTTCAGT
 
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JMFS114E06+           GGTTTTCTGGATCTCGCTTTCTTCGCAGGGATGGGATTGGGCATTTCTGCAATGGCGGCC
JMSF051M24+           GGTTTTCTGGATCTCGCTTTCTTCGCAGGGATGGGATTGGGCATTTCTGCAATGGCGGCC
                      ____________________________________________________________
consensus             GGTTTTCTGGATCTCGCTTTCTTCGCAGGGATGGGATTGGGCATTTCTGCAATGGCGGCC
 
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JMFS114E06+           ATGGCTGGGAAAAAGGGAGTTTGAAATGAGAAACGGCTAGTTGCAGTGA           
JMSF051M24+           ACGGCTGGGAAAAAGGGAGTTTGAAATGAGAAACGGCTAGTTGCAGTGATTTTCGTTTCC
                      ____________________________________________________________
consensus             ATGGCTGGGAAAAAGGGAGTTTGAAATGAGAAACGGCTAGTTGCAGTGATTTTCGTTTCC