Contig 012197:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043M17Sequence757012197 (2)ref|XP_006349193.1|3e-51PREDICTED: PH-interacting protein-like [Solanum tuberosum]
JMSF051K12Sequence626012197 (2)ref|XP_009598019.1|1e-25PREDICTED: bromodomain and WD repeat-containing protein 1-like [Nicotiana tomen796016224ref|XP_011081452.1|9e-83PREDICTED: bromodomain and WD repeat-containing DDB_G0285837-like [Sesamum indi

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+                          CAGTTCCGAGAAGAGTTGGTACATCAGCAGCACTAGGAGTATTTC
                      ____________________________________________________________
consensus                            CAGTTCCGAGAAGAGTTGGTACATCAGCAGCACTAGGAGTATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           TCCCAATATGATGTAGTGGAGGAGGTGAACTTAGTATCAGTTGTTTGAGCAGTTTTACCA
                      ____________________________________________________________
consensus             TCCCAATATGATGTAGTGGAGGAGGTGAACTTAGTATCAGTTGTTTGAGCAGTTTTACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           AGTGGTCCTTTTCAATGTGAGAATACCTTTGAACAAGGTTATCATAATTTAGAGGTAAAG
JMSF051K12+                                           ACAAGGTTATCATAATTTAGAGGTAAAG
                      ____________________________________________________________
consensus             AGTGGTCCTTTTCAATGTGAGAATACCTTTGAACAAGGTTATCATAATTTAGAGGTAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           ATACTCCATCATCATCATTCCCACCAAGTACGCTGCTTCTTGAATACCAAGCATGATATC
JMSF051K12+           ATACTCCATCATCATCATTCCCACCAAGTACGCTGCTTCTTGAATACCAAGCATGATATC
                      ____________________________________________________________
consensus             ATACTCCATCATCATCATTCCCACCAAGTACGCTGCTTCTTGAATACCAAGCATGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           TCCTCGGTAGAAGCTCATGTTCCAAGAGTTCATCATGAAGTTGCCCAAAAGCTTTCTGGC
JMSF051K12+           TCCTCGGTAGAAGCTCATGTTCCAAGAGTTCATCATGAAGTTGCCCAAAAGCTTTCTGGC
                      ____________________________________________________________
consensus             TCCTCGGTAGAAGCTCATGTTCCAAGAGTTCATCATGAAGTTGCCCAAAAGCTTTCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           ATGGCCCAGATGATAAAAAATGCATAATTAGAAAATATATTTCCCTACAGTCAACATCAA
JMSF051K12+           ATGGCCCAGATGATAAAAAATGCATAATTAGAAAATATATTTCCCTACAGTCAACATCAA
                      ____________________________________________________________
consensus             ATGGCCCAGATGATAAAAAATGCATAATTAGAAAATATATTTCCCTACAGTCAACATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           CAGCCTCCATTGAGGTGTGCTCCAAAGCTCTGTCCTGTTCTTCAAATTGAGTTTTTGTAT
JMSF051K12+           CAGCCTCCATTGAG--GTGCTCCAAAGCTCTGTCCTGTTCTTCAAATTGAGTTTTTGTAT
                      ____________________________________________________________
consensus             CAGCCTCCATTGAGGTGTGCTCCAAAGCTCTGTCCTGTTCTTCAAATTGAGTTTTTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           GCATCCGATTCAGGAAGCTTGGTGCCATATTTAAAGATAGTGCCCCAGTAATAGATGTGC
JMSF051K12+           GCATCCGATTCAGGAAGCTTGGTGCCATATTTAAAGATAGTGCCCCAGTAATAGATGTGC
                      ____________________________________________________________
consensus             GCATCCGATTCAGGAAGCTTGGTGCCATATTTAAAGATAGTGCCCCAGTAATAGATGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           ATTTACCAAAATCCATCCTTTAATTTACAACCTAGGCAGCATATCAGCATCCCTTAACAT
JMSF051K12+           ATTTACCAAAATCCATCCTTTAATTTACAACCTAGGCAGCATATCAGCATCCCTTAACAT
                      ____________________________________________________________
consensus             ATTTACCAAAATCCATCCTTTAATTTACAACCTAGGCAGCATATCAGCATCCCTTAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           ATGCATAGCGAGGGTTGCTTAAAAGACAAATAGGGTAAGTTTGGCGTTTTCAGATACAGC
JMSF051K12+           ATGCATAGCGAGGGTTGCTTAAAAGACAAATAGGGTAAGTTTGGCGTTTTCAGATACAGC
                      ____________________________________________________________
consensus             ATGCATAGCGAGGGTTGCTTAAAAGACAAATAGGGTAAGTTTGGCGTTTTCAGATACAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           TGATTTTGCACTTTTATTAGCTTTCGTTGTGGGCTCGAAGGTCAGGGGCACCGCGGTAAG
JMSF051K12+           TGATTTTGCACTTTTATTAGCTTTCGTTGTGGGCTCGAAGGTCAGGGGCACCGCGGTAAG
                      ____________________________________________________________
consensus             TGATTTTGCACTTTTATTAGCTTTCGTTGTGGGCTCGAAGGTCAGGGGCACCGCGGTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           GTTGCCGAATTCTGAAAGACCGCCGGCGGTGGGCCGATGGCGCTGTTTAAAGCATGCTGA
JMSF051K12+           GTTGCCGAATTCTGAAAGACCGCCGGCGGTGGGCCGATGGCGCTGTTTAAAGCATGCTGA
                      ____________________________________________________________
consensus             GTTGCCGAATTCTGAAAGACCGCCGGCGGTGGGCCGATGGCGCTGTTTAAAGCATGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF043M17+           CGTGGCAAAGGCGCAAATTCCTGTTTTGGGAGTCGCTGCCGTACCGGAAA          
JMSF051K12+           CGTGGCAAAGGCGCAAATTCCTGTTTTGGGAGTCGCTGCCGTACCGGAAACAGGAACCTC
                      ____________________________________________________________
consensus             CGTGGCAAAGGCGCAAATTCCTGTTTTGGGAGTCGCTGCCGTACCGGAAACAGGAACCTC