Contig 012195:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K10Sequence438003227 (144)ref|XP_006361530.1|3e-66PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like isoform X1 [S343012195 (4)ref|XP_011074042.1|3e-35PREDICTED: AP-1 complex subunit sigma-1 [Sesamum indicum]
JMSF044L12Sequence796012195 (4)ref|XP_011074042.1|6e-109PREDICTED: AP-1 complex subunit sigma-1 [Sesamum indicum]671011919 (10)ref|XP_009618458.1|5e-119PREDICTED: protein EXORDIUM-like [Nicotiana tomentosiformis]
JMSF051H24Sequence651012195 (4)emb|CDP16375.1|2e-107unnamed protein product [Coffea canephora]674012195 (4)ref|XP_009593633.1|4e-101PREDICTED: AP-1 complex subunit sigma-1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF051H24-                           GTACACAAGTGGGCAAGTAGCACAGGACTACAGACTATGCTGT
                      ____________________________________________________________
consensus                              GTACACAAGTGGGCAAGTAGCACAGGACTACAGACTATGCTGT
 
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rJMSF051H24-          AATATGCAAAATCAAGTATATTGCTACAACCAAGTAGAGTACAAAAGATAAAAAAAAAAT
JMSF044L12+                                                             AAAAAAAAAT
                      ____________________________________________________________
consensus             AATATGCAAAATCAAGTATATTGCTACAACCAAGTAGAGTACAAAAGATAAAAAAAAAAT
 
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rJMSF051H24-          TGCTTGAAAATAAAGAGAACTAGTACTTTTAAGAACACGACAAACATATCAGAGGAGAAA
JMSF044L12+           TGCTTGAAAATAAAGAGAACTAGTACTTTTAAGAACACGACAAACATATCAGAGGAGAAA
                      ____________________________________________________________
consensus             TGCTTGAAAATAAAGAGAACTAGTACTTTTAAGAACACGACAAACATATCAGAGGAGAAA
 
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rJMSF051H24-          TAATGTCTCATGAAGATCACATAATGCATAAAAGGAAAATGTCTCTGTACTGCATTCTCA
rJMSF001K10-                                    CATAAAAGGAANATGTCTCTGTACTGCATTCTCA
JMSF044L12+           TAATGTCTCATGAAGATCACATAATGCATAAAAGGAAAATGTCTCTGTACTGCATTCTCA
                      ____________________________________________________________
consensus             TAATGTCTCATGAAGATCACATAATGCATAAAAGGAAAATGTCTCTGTACTGCATTCTCA
 
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rJMSF051H24-          TTTTGTGGCTTGTGCAATCATGTTACTTAGCGAACTTGCCTGCTCTTTGGCAGCCTCTAC
rJMSF001K10-          TTTTGTGGCTTGTGCAATCATGTTACTTAGCGAACTTGCCTGCTCTTTGGCAGCCTCTAC
JMSF044L12+           TTTTGTGGCTTGTGCAATCATGTTACTTAGCGAACTTGCCTGCTCTTTGGCAGCCTCTAC
JMSF051H24+                    TTGTGCAATCATGTTACTTAGCGAACTTGCCTGCTCTTTGGCAGCCTCTAC
                      ____________________________________________________________
consensus             TTTTGTGGCTTGTGCAATCATGTTACTTAGCGAACTTGCCTGCTCTTTGGCAGCCTCTAC
 
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rJMSF051H24-          CAAAGAATCCTGTGCAGCAATTAAACGCGCAACAGTTTTCTTGCTTGATTCTTGGAGTTC
rJMSF001K10-          CANAGAATCCTGTGCNGCAATTAAACGCGCANCNGTTTTCTTGCTTGATTCTTGGAGTTC
JMSF044L12+           CAAAGAATCCTGTGCAGCAATTAAACGCGCAACAGTTTTCTTGCTTGATTCTTGGAGTTC
JMSF051H24+           CAAAGAATCCTGTGCAGCAATTAAACGCGCAACAGTTTTCTTGCTTGATTCTTGGAGTTC
                      ____________________________________________________________
consensus             CAAAGAATCCTGTGCAGCAATTAAACGCGCAACAGTTTTCTTGCTTGATTCTTGGAGTTC
 
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rJMSF051H24-          ACCAGCAATCAAAAGTTCATCCAGTATGTAATATGCCTTGTGAAAATTAAATATTAGGTC
rJMSF001K10-          ACCNACAATCNAAAGTTCANCNAGNATGTANTATGCCTTGNGAAAATTACATATTAGGTC
JMSF044L12+           ACCAGCAATCAAAAGTTCATCCAGTATGTAATATGCCTTGTGAAAATTAAATATTAGGTC
JMSF051H24+           ACCAGCAATCAAAAGTTCATCCAGTATGTAATATGCCTTGTGAAAATTAAATATTAGGTC
                      ____________________________________________________________
consensus             ACCAGCAATCAAAAGTTCATCCAGTATGTAATATGCCTTGTGAAAATTAAATATTAGGTC
 
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rJMSF051H24-          CAGCTCACAAACACTGCCAAAGTATCTGTCTAATATCTCAACATAGTGGTGAATGATTTC
rJMSF001K10-          CAGCTCACNAACNCTGCCNAAGTATCTGNCTAATATCTCANCATAGTGGTGAATGATTTC
JMSF044L12+           CAGCTCACAAACACTGCCAAAGTATCTGTCTAATATCTCAACATAGTGGTGAATGATTTC
JMSF051H24+           CAGCTCACAAACACTGCCAAAGTATCTGTCTAATATCTCAACATAGTGGTGAATGATTTC
                      ____________________________________________________________
consensus             CAGCTCACAAACACTGCCAAAGTATCTGTCTAATATCTCAACATAGTGGTGAATGATTTC
 
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rJMSF051H24-          CAATATCTCCAATTCATTGTCCTCTTGATCAATACACATGCAGAAATAAAGACTAGCATA
rJMSF001K10-          CAANATCTCCAATTCATTGTCCTCTTGATCAATACNCATGCAGAAATAANGACTAGCATA
JMSF044L12+           CAATATCTCCAATTCATTGTCCTCTTGATCAATACACATGCAGAAATAAAGACTAGCATA
JMSF051H24+           CAATATCTCCAATTCATTGTCCTCTTGATCAATACACATGCAGAAATAAAGACTAGCATA
                      ____________________________________________________________
consensus             CAATATCTCCAATTCATTGTCCTCTTGATCAATACACATGCAGAAATAAAGACTAGCATA
 
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rJMSF051H24-          TCTTTTATAAACAACTTTAAATCCTCTCCATTCCACAAAATTGCAAAGCTTTGGGCCTCG
rJMSF001K10-          NCTTTTATA                                                   
JMSF044L12+           TCTTTTATAAACAACTTTAAATCCTCTCCATTCCACAAAATTGCAAAGCTTTGGGCCTCG
JMSF051H24+           TCTTTTATAAACAACTTTAAATCCTCTCCATTCCACAAAATTGCAAAGCTTTGGGCCTCG
                      ____________________________________________________________
consensus             TCTTTTATAAACAACTTTAAATCCTCTCCATTCCACAAAATTGCAAAGCTTTGGGCCTCG
 
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rJMSF051H24-          GGTGAGAATCATACCACTGAGCTCACGAATCACCTTAGTTCTCTCCTTCTGGGCATATGG
JMSF044L12+           GGTGAGAATCATACCACTGAGCTCACGAATCACCTTAGTTCTCTCCTTCTGGGCATATGG
JMSF051H24+           GGTGAGAATCATACCACTGAGCTCACGAATCACCTTAGTTCTCTCCTTCTGGGCATATGG
                      ____________________________________________________________
consensus             GGTGAGAATCATACCACTGAGCTCACGAATCACCTTAGTTCTCTCCTTCTGGGCATATGG
 
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rJMSF051H24-          AGAATACCATTTTGTCAGCCTCACTTTTCCC                             
JMSF044L12+           AGAATACCATTTTGTCAGCCTCACTTTTCCCTGCCGGCTTATAAGAAGTACAAAATGGAT
JMSF051H24+           AGAATACCATTTTGTCAGCCTCACTTTTCCCTGCCGGCTTATAAGAAGTACAAAATGGAT
                      ____________________________________________________________
consensus             AGAATACCATTTTGTCAGCCTCACTTTTCCCTGCCGGCTTATAAGAAGTACAAAATGGAT
 
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JMSF044L12+           CATGACTGCAGAATAATGGCCGAGAGAAGCACCAAAGACCGCACTTCTCAACGCTCCCGN
JMSF051H24+           CATGACTGCAGAATAATGGCCGAGAGAAGCACCAAAGACCGCACTTCTCAACGCTCCCGC
                      ____________________________________________________________
consensus             CATGACTGCAGAATAATGGCCGAGAGAAGCACCAAAGACCGCACTTCTCAACGCTCCCGC
 
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JMSF044L12+           TATTGTTTCAGGACCCCTTTACTTGTCCGAGATGAAATCGCAGTATCGCACCCGAGAAAA
JMSF051H24+           TATTGTTTCAGGACCCCTTTACTTGTCCGAGATGAAATCGCAGTATCGCACCCGAGAAAA
                      ____________________________________________________________
consensus             TATTGTTTCAGGACCCCTTTACTTGTCCGAGATGAAATCGCAGTATCGCACCCGAGAAAA
 
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JMSF044L12+           AGGACCCGTTTCCTGATTCAAGTTGTACGGGTTTTCATTTTGTAAAATGTATGT      
JMSF051H24+           AGGACCCGTTTCCTGATTCAAGTTGTACGGGTTTTCATTTTGTAAAATGTATGTAATTCC
                      ____________________________________________________________
consensus             AGGACCCGTTTCCTGATTCAAGTTGTACGGGTTTTCATTTTGTAAAATGTATGTAATTCC