Contig 012187:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF044B17-                                                                 AGTTT
                      ____________________________________________________________
consensus                                                                    AGTTT
 
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rJMSF044B17-          TCGAGTTTACAAAGAATTTTAGTTCAGAAACAATGAAGCACTCATTATAATATATTACAG
rJMSF049G23-                                 TCAGAAACAATGAAGCACTCATTATAATATATTACAG
                      ____________________________________________________________
consensus             TCGAGTTTACAAAGAATTTTAGTTCAGAAACAATGAAGCACTCATTATAATATATTACAG
 
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rJMSF044B17-          GGAGGCATCAGAATTTGCAGGGACAAACTTGAGAGAGATACTATTCACGCAATGGCGCTC
rJMSF049G23-          GGAGGCATCAGAATTTGCAGGGACAAACTTGAGAGAGATACTATTCACGCAATGGCGCTC
                      ____________________________________________________________
consensus             GGAGGCATCAGAATTTGCAGGGACAAACTTGAGAGAGATACTATTCACGCAATGGCGCTC
 
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rJMSF044B17-          GTTTGTTGGGGTAGGGAATCCTTCGCCCTTGAAAACATGGCCAAGGTGTCCTCCACAGGC
rJMSF049G23-          GTTTGTTGGGGTAGGGAATCCTTCGCCCTTGAAAACATGGCCAAGGTGTCCTCCACAGGC
                      ____________________________________________________________
consensus             GTTTGTTGGGGTAGGGAATCCTTCGCCCTTGAAAACATGGCCAAGGTGTCCTCCACAGGC
 
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rJMSF044B17-          AGCGCATGTAATTTCTATTCTTCTCCCGTCTGGATCGGGGGTTTGATTTATGGCTCCGGG
rJMSF049G23-          AGCGCATGTAATTTCTATTCTTCTCCCGTCTGGATCGGGGGTTTGATTTATGGCTCCGGG
JMSF044B17+                                       TCTGGATCGGGGGTTTGATTTATGGCTCCGGG
JMSF049G23+                                       TCTGGATCGGGGGTTTGATTTATGGCTCCGGG
                      ____________________________________________________________
consensus             AGCGCATGTAATTTCTATTCTTCTCCCGTCTGGATCGGGGGTTTGATTTATGGCTCCGGG
 
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rJMSF044B17-          GAGACCCTCGAAGAAAGCTGGCCAGCCACACCCAGAGTTGAACTTTGTTGTGGACCGGTA
rJMSF049G23-          GAGACCCTCGAAGAAAGCTGGCCAGCCACACCCAGAGTTGAACTTTGTTGTGGACCGGTA
JMSF044B17+           GAGACCCTCGAAGAAAGCTGGCCAGCCACACCCAGAGTTGAACTTTGTTGTGGACCGGTA
JMSF049G23+           GAGACCCTCGAAGAAAGCTGGCCAGCCACACCCAGAGTTGAACTTTGTTGTGGACCGGTA
                      ____________________________________________________________
consensus             GAGACCCTCGAAGAAAGCTGGCCAGCCACACCCAGAGTTGAACTTTGTTGTGGACCGGTA
 
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rJMSF044B17-          AAGGGGAGTTCCACATCCTGCACACTCGTACAATCCCGCTTCAAAAAACTTGTCGTATTC
rJMSF049G23-          AAGGGGAGTTCCACATCCTGCACACTCGTACACTCCCGCTTCAAAAAACTTGTCGTATTC
JMSF044B17+           AAGGGGAGTTCCACATCCTGCACACTCGTACAATCCCGCTTCAAAAAACTTGTCGTATTC
JMSF049G23+           AAGGGGAGTTCCACATCCTGCACACTCGTACACTCCCGCTTCAAAAAACTTGTCGTATTC
                      ____________________________________________________________
consensus             AAGGGGAGTTCCACATCCTGCACACTCGTACACTCCCGCTTCAAAAAACTTGTCGTATTC
 
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rJMSF044B17-          CCCGGTTCCTGGGTACTCAGTCCCCTTCATCCTCAAAATCCGGAACTGTTCAGGAGAGAG
rJMSF049G23-          CCCGGTTCCTGGGTACTCAGTCCCCTTCATCCTCAAAATCCGGAACTGTTCAGGAGAGAG
JMSF044B17+           CCCGGTTCCTGGGTACTCAGTCCCCTTCATCCTCAAAATCCGGAACTGTTCAGGAGAGAG
JMSF049G23+           CCCGGTTCCTGGGTACTCAGTCCCCTTCATCCTCAAAATCCGGAACTGTTCAGGAGAGAG
                      ____________________________________________________________
consensus             CCCGGTTCCTGGGTACTCAGTCCCCTTCATCCTCAAAATCCGGAACTGTTCAGGAGAGAG
 
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rJMSF044B17-          AATAGCGCGCCACTCCTCTTCGGACTTCTGAACCGAGGTGGGAGAAGCCATGGCTACGAC
rJMSF049G23-          AATAGCGCGCCACTCCTCTTCGGACTTCTGAACCGAGGTGGGAGAAGCCATGGCTACGAC
JMSF044B17+           AATAGCGCGCCACTCCTCTTCGGACTTCTGAACCGAGGTGGGAGAAGCCATGGCTACGAC
JMSF049G23+           AATAGCGCGCCACTCCTCTTCGGACTTCTGAACCGAGGTGGGAGAAGCCATGGCTACGAC
                      ____________________________________________________________
consensus             AATAGCGCGCCACTCCTCTTCGGACTTCTGAACCGAGGTGGGAGAAGCCATGGCTACGAC
 
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rJMSF044B17-          CCGTGAAGCTCTGAGGCCTCTCTGATGAATCAAACCGCCGAACACAGATGAGGAAATGGT
rJMSF049G23-          CCGTGAAGCTCTGAGGCCTCTCTGATGAATCAAACCGCCGAACACAGATGAGGAAATGGT
JMSF044B17+           CCGTGAAGCTCTGAGGCCTCTCTGATGAATCAAACCGCCGAACACAGATGAGGAAATGGT
JMSF049G23+           CCGTGAAGCTCTGAGGCCTCTCTGATGAATCAAACCGCCGAACACAGATGAGGAAATGGT
                      ____________________________________________________________
consensus             CCGTGAAGCTCTGAGGCCTCTCTGATGAATCAAACCGCCGAACACAGATGAGGAAATGGT
 
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rJMSF044B17-          GAGCCGGATAGCCCTAGAAGAAGAGATATCCAATTGGGTCGTCTTGGGTAGTGCAGAAAT
rJMSF049G23-          GAGCCGGATAGCCCTAGAAGAAGAGATATCCAATTGGGTCGTCTTGGGTAGTGCAGAAAT
JMSF044B17+           GAGCCGGATAGCCCTAGAAGAAGAGATATCCAATTGGGTCGTCTTGGGTAGTGCAGAAAT
JMSF049G23+           GAGCCGGATAGCCCTAGAAGAAGAGATATCCAATTGGGTCGTCTTGGGTAGTGCAGAAAT
                      ____________________________________________________________
consensus             GAGCCGGATAGCCCTAGAAGAAGAGATATCCAATTGGGTCGTCTTGGGTAGTGCAGAAAT
 
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rJMSF044B17-          TGGGATAAAGTTATTGGACAGGAATCTTGAAACAGCGGTGGAATTGCGAATGAAGGGTCT
rJMSF049G23-          TGGGATAAAGTTATTGGACAGGAATCTTGAAACAGCGGTGGAATTGCGAATGAAGGGTCT
JMSF044B17+           TGGGATAAAGTTATTGGACAGGAATCTTGAAACAGCGGTGGAATTGCGAATGAAGGGTCT
JMSF049G23+           TGGGATAAAGTTATTGGACAGGAATCTTGAAACAGCGGTGGAATTGCGAATGAAGGGTCT
                      ____________________________________________________________
consensus             TGGGATAAAGTTATTGGACAGGAATCTTGAAACAGCGGTGGAATTGCGAATGAAGGGTCT
 
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rJMSF044B17-          AGAATACGAA                                                  
rJMSF049G23-          AGAATACGAA                                                  
JMSF044B17+           AGAATACGAAAACGGGGAAAGTTGAAGGATCTGAACGCCCATTGGAGGTAATACTGAATT
JMSF049G23+           AGAATACGAAAACGGGGAAAGTTGAAGGATCTGAACGCCCATTGGAGGTAATACTGAATT
                      ____________________________________________________________
consensus             AGAATACGAAAACGGGGAAAGTTGAAGGATCTGAACGCCCATTGGAGGTAATACTGAATT
 
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JMSF044B17+           GGGAACGTAAAAAAACAAAAAACAAAAATAAATCTTTGAAGATATGTGTTGCGTTTGCTC
JMSF049G23+           GGGAACGTAAAAAAACAAAAAACAAAAATAAATCTTTGAAGATATGTGTTGCGTTTGCTC
                      ____________________________________________________________
consensus             GGGAACGTAAAAAAACAAAAAACAAAAATAAATCTTTGAAGATATGTGTTGCGTTTGCTC
 
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JMSF044B17+           TGACCTGACCAGTTCAATCCATTATCTTCTTGAAACGATGAGTGAAAATACTACTCCTT 
JMSF049G23+           TGACCTGACCAGTTCAATCCATTATCTTCTTGAAACGATGAGTGAAAATACTACTCCTTT
                      ____________________________________________________________
consensus             TGACCTGACCAGTTCAATCCATTATCTTCTTGAAACGATGAGTGAAAATACTACTCCTTT