Contig 012184:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050M03Sequence631012184 (6)ref|XP_006359849.1|2e-46PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]571004167 (5)ref|XP_004247413.1|4e-46PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMFS050A06Sequence575012184 (6)ref|XP_004247413.1|5e-111PREDICTED: blue-light photoreceptor PHR2 [Solanum lycopersicum]
JMSF022J21Sequence639012184 (6)ref|XP_006359849.1|5e-78PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]778004167 (5)ref|XP_009770640.1|3e-102PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF034F10Sequence689012184 (6)ref|XP_006359849.1|7e-59PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]739004167 (5)ref|XP_009770640.1|8e-94PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF047K23Sequence693012184 (6)ref|XP_006359849.1|5e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]711004167 (5)ref|XP_009770640.1|9e-98PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]
JMSF049D19Sequence693012184 (6)ref|XP_006359849.1|2e-60PREDICTED: blue-light photoreceptor PHR2-like [Solanum tuberosum]781004167 (5)ref|XP_009770640.1|4e-101PREDICTED: blue-light photoreceptor PHR2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS050A06+                                    CTTCAAGTTTGAAAGGCAAATCATCAACATGATAC
                      ____________________________________________________________
consensus                                      CTTCAAGTTTGAAAGGCAAATCATCAACATGATAC
 
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JMFS050A06+           AATGTGCTTCCCCAGAAGAATTTCACATCGATGCCTTCATTCTTCATCACAGTCTCAATC
                      ____________________________________________________________
consensus             AATGTGCTTCCCCAGAAGAATTTCACATCGATGCCTTCATTCTTCATCACAGTCTCAATC
 
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JMFS050A06+           TTGTCTTCGGACTTAACTTCATCGTGAGAAATTTCGCGGTGAGCATACACTGCCTCGGCG
                      ____________________________________________________________
consensus             TTGTCTTCGGACTTAACTTCATCGTGAGAAATTTCGCGGTGAGCATACACTGCCTCGGCG
 
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JMFS050A06+           CCGACGGCCTTGGCCAGCTCGACGAGCACCGTCTCCGGCTTCCCAACTCTGACGACGAGA
JMSF022J21+                          AGCTCGACGAGCACCGTCTCCGGCTTCCCAACTCTGACGACGAGA
                      ____________________________________________________________
consensus             CCGACGGCCTTGGCCAGCTCGACGAGCACCGTCTCCGGCTTCCCAACTCTGACGACGAGA
 
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JMFS050A06+           TTAGACCCTCGCGCCTGCAAGTTCTTCCGGAGGTCCGAGACTGACTCAATCACGAACGTG
JMSF022J21+           TTAGACCCTCGCGCCTGCAAGTTCTTCCGGAGGTCCGAGACTGACTCAATCACGAACGTG
JMSF047K23+                                      CGGAGNTCCGAGACTGACTCAATCACGAACGTG
JMSF034F10+                                        GAGGTCCGAGACTGACTCAATCACGAACGTG
JMSF049D19+                                      CGGAGGTCCGAGACTGACTCAATCACGAACGTG
                      ____________________________________________________________
consensus             TTAGACCCTCGCGCCTGCAAGTTCTTCCGGAGGTCCGAGACTGACTCAATCACGAACGTG
 
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JMFS050A06+           GCGCGGTACGGGCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
JMSF022J21+           GCGCGGTACGGGCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
JMSF047K23+           GCGCGGTACGGGCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
JMFF050M03+                                     TCCAGAGGAGGACTNGCCGTAGTCTCTGGGGTCA
JMSF034F10+           GCGCCGTACGGNCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
JMSF049D19+           GCGCGGTACGGGCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
                      ____________________________________________________________
consensus             GCGCGGTACGGGCCGGTCTTGTCGAATCCAGAGGAGGACTTGCCGTAGTCTCTGGGGTCA
 
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JMFS050A06+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTTGGCGGCGTTGAGGCACTCGTTG
JMSF022J21+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTTGGCGGCGTTGAGGCACTCGTTG
JMSF047K23+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTNGGCGGCGTTGAGGCACTCGTTG
JMFF050M03+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTNGGCGGCGTTGAGGCACTCGTTG
JMSF034F10+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTNGGCGGCGTTGAGGCACTCGTTG
JMSF049D19+           AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTTGGCGGCGTTGAGGCACTCGTTG
                      ____________________________________________________________
consensus             AAGCAGTAAACAGGCAAGACCGACATGGATTCATTGTTGGCGGCGTTGAGGCACTCGTTG
 
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JMFS050A06+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
JMSF022J21+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
JMSF047K23+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
JMFF050M03+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
JMSF034F10+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
JMSF049D19+           TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
                      ____________________________________________________________
consensus             TCGTGGACGCGGAGGTCGTTGCGGAACCAGACGATGGAGGCTCGGCGGAGGGCGGCGGCG
 
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JMFS050A06+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
JMSF022J21+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
JMSF047K23+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
JMFF050M03+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
JMSF034F10+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
JMSF049D19+           TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
                      ____________________________________________________________
consensus             TTGGAGGGGTCGGAGGGGCGGAGAGGGTTGAGGGAGAGAGGGCTGTGGAGAGGGGTTGCG
 
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JMFS050A06+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
JMSF022J21+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
JMSF047K23+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
JMFF050M03+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
JMSF034F10+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
JMSF049D19+           GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
                      ____________________________________________________________
consensus             GAAAGAGTGGATTTGAGGAGCGGCTTTGTCGGGGAGAGAGAGGCGGCGAGGGAGAGGCGG
 
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JMSF022J21+           GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
JMSF047K23+           GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
JMFF050M03+           GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
JMSF034F10+           GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
JMSF049D19+           GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
                      ____________________________________________________________
consensus             GAGAGAGAGGAGATTTGGGAAGGGATTTTGATTTTGTTGGGGCTGGGAGCTAAAAGGGTG
 
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JMSF022J21+           GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
JMSF047K23+           GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
JMFF050M03+           GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
JMSF034F10+           GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
JMSF049D19+           GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
                      ____________________________________________________________
consensus             GAGATTTTGGGGGGGTTGAGGAAGTGGGTAGGGAGGATTGTGGATAAAGATAGGGAGATA
 
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JMSF022J21+           GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
JMSF047K23+           GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
JMFF050M03+           GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
JMSF034F10+           GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
JMSF049D19+           GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
                      ____________________________________________________________
consensus             GATGCAATGGGCGGTGAAGGTGTAGCAATGGCGGCTGCCACCTGGGTTTGCTCTTCTGCT
 
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JMSF022J21+           TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTT        
JMSF047K23+           TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTTTGGAGAAG
JMFF050M03+           TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTTTGGAGAAG
JMSF034F10+           TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTTTGGAGAAG
JMSF049D19+           TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTTTGGAGAAG
                      ____________________________________________________________
consensus             TCTTCATTTTCATGGGATGGAATCTTTTTAGGATCCATTTTCGAGAAATCTTTGGAGAAG
 
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JMSF047K23+           AAGATTCAGTTGAGAGGATGAATGATGATAAAGGCAATGCGATGGGTGGTGGCTCCTCCT
JMFF050M03+           AAGATTCAGTTGAGAGGATGAATGATGATAAAGGCAATGCGATGGGTGGTGGCTCCTCCT
JMSF034F10+           AAGATTCAGTTGAGAGGATGAATGATGATAAAGGCAATGCGATGGGTGGTGGCTCCTCCT
JMSF049D19+           AAGATTCAGTTGAGAGGATGAATGATGATAAAGGCAATGCGATGGGTGGTGGCTCCTCCT
                      ____________________________________________________________
consensus             AAGATTCAGTTGAGAGGATGAATGATGATAAAGGCAATGCGATGGGTGGTGGCTCCTCCT
 
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JMSF047K23+           CCTCTCAGGGTAGTTGGGCCTCCCCTTACTGCCCTGTTTTGTGTGGTCTGTGAAGT    
JMFF050M03+           CCTCTCAGGGTAGTTGGGCCTCCCCTTACTGCCCTGTTTTGTGTGGTCTGTGAAGT    
JMSF034F10+           CCTCTCAGGGTAGTTGGGCCTCCCCTTACTGCCCTGTTTTGTGTGGTCTGTGAAGT    
JMSF049D19+           CCTCTCAGGGTAGTTGGGCCTCCCCTTACTGCCCTGTTTTGTGTGGTCTGTGAAGTTGAC
                      ____________________________________________________________
consensus             CCTCTCAGGGTAGTTGGGCCTCCCCTTACTGCCCTGTTTTGTGTGGTCTGTGAAGTTGAC