Contig 012182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012O09Sequence310012182 (2)ref|XP_010318754.1|1e-06PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101255783 [Solanum l762009884 (8)emb|CDP16697.1|6e-129unnamed protein product [Coffea canephora]
JMSF049B19Sequence650012182 (2)ref|XP_009605600.1|3e-45PREDICTED: putative leucine-rich repeat-containing protein DDB_G0290503 isoform781022666ref|XP_006364237.1|7e-49PREDICTED: myosin-10-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF049B19+                     TCTTAGATCATAAGATAGAGTTATAAAATCACTAAATCTTCGTTGTATTC
                      ____________________________________________________________
consensus                       TCTTAGATCATAAGATAGAGTTATAAAATCACTAAATCTTCGTTGTATTC
 
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JMSF049B19+           CCCTTGTAGTTGTAATTCCTTGTGGTGATTGTATTCCGACAAGAACCTCGTAAAGCACCA
                      ____________________________________________________________
consensus             CCCTTGTAGTTGTAATTCCTTGTGGTGATTGTATTCCGACAAGAACCTCGTAAAGCACCA
 
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JMSF049B19+           CAGATTCTGAAGCACTGGACTCTGACGATAGTTTCCAAGAAGGTATTGTAACGCAATAAC
                      ____________________________________________________________
consensus             CAGATTCTGAAGCACTGGACTCTGACGATAGTTTCCAAGAAGGTATTGTAACGCAATAAC
 
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JMSF049B19+           TCCATCCTGTGTGAAAGTCATGAGGCCACACACTGTTTTGTCCATCCCAAACACGAGGTG
                      ____________________________________________________________
consensus             TCCATCCTGTGTGAAAGTCATGAGGCCACACACTGTTTTGTCCATCCCAAACACGAGGTG
 
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JMSF012O09+                              CAGGGGAAGCGGCGAAGTGCCGTCGTGGCGGTGCCTCGGTG
JMSF049B19+           GAGGACTCCAGTCCATGCCCAGGGGAAGCGGCGAAGTGCCGTCGTGGCGGTGCCTCGGTG
                      ____________________________________________________________
consensus             GAGGACTCCAGTCCATGCCCAGGGGAAGCGGCGAAGTGCCGTCGTGGCGGTGCCTCGGTG
 
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JMSF012O09+           GACTCGCATCCCTATTACCAGAGGATAGCCCCGTCAGAGCTCCAAGTCCGGGAAAACCGC
JMSF049B19+           GACTCGCATCCCTATTACCAGAGGATAGCCCCGTCAGAGCTCCAAGTCCGGGAAAACCGC
                      ____________________________________________________________
consensus             GACTCGCATCCCTATTACCAGAGGATAGCCCCGTCAGAGCTCCAAGTCCGGGAAAACCGC
 
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JMSF012O09+           CGGCGGTAACCTGCGGATGGTTGTAAAGGTTGAGAGACTCGATGATGGCGGGATCGGTGA
JMSF049B19+           CGGCGGTAACCTGCGGATGGTTGTAAAGGTTGAGAGACTCGATGATGGCGGGATCGGTGA
                      ____________________________________________________________
consensus             CGGCGGTAACCTGCGGATGGTTGTAAAGGTTGAGAGACTCGATGATGGCGGGATCGGTGA
 
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JMSF012O09+           GTCCCAAGTCGAAGAGAGTGTAGGGCCCGTACATGTTCGTCATCATCGTTGCAGTCGTCG
JMSF049B19+           GTCCCAAGTCGAAGAGAGTGTAGGGCCCGTACATGTTCGTCATCATCGTTGCAGTCGTCG
                      ____________________________________________________________
consensus             GTCCCAAGTCGAAGAGAGTGTAGGGCCCGTACATGTTCGTCATCATCGTTGCAGTCGTCG
 
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JMSF012O09+           GCGGCGGAGACTGAGTGTTCGCTTCGGTTTCGACGGGAAGAAATACTCTTCGCGGCTCAC
JMSF049B19+           GCGGCGGAGACTGAGTGTTCGCTTCGGTTTCGACGGGAAGAAATACTCTTCGCGGCTCAC
                      ____________________________________________________________
consensus             GCGGCGGAGACTGAGTGTTCGCTTCGGTTTCGACGGGAAGAAATACTCTTCGCGGCTCAC
 
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JMSF012O09+           CTAACGGTCGAGTTAGTTGTGCAGAG                                  
JMSF049B19+           CTAACGGTCGAGTTAGTTGTGCAGAGTCAATTGACTTGTGCTCGAAGAAGACGATAACGC
                      ____________________________________________________________
consensus             CTAACGGTCGAGTTAGTTGTGCAGAGTCAATTGACTTGTGCTCGAAGAAGACGATAACGC
 
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JMSF049B19+           ATCGCGGATGTTGTTCACTGTGCTTCTACATGTGTACCGTTGTGATTTGTGAATCAAACC
                      ____________________________________________________________
consensus             ATCGCGGATGTTGTTCACTGTGCTTCTACATGTGTACCGTTGTGATTTGTGAATCAAACC